CANTATAdb - search

Detailed information on CNT30178555

BLAST search results

BLAST vs Swiss-Prot:
sp|Q3BAI2|YCX91_PHAAO, E-value = 2e-32

BLAST vs NONCODE:
NONZMAT001340, E-value = 2e-111

Results of reciprocal BLAST search (potential orthologs)

Target	Query species	Target species	Query coverage (%)	Target coverage (%)	Identity	Alignment length (nt)	Orientation
CNT30712450	Secale cereale	Glycine max	32.54	96.48	87.96	274	forward
CNT30552690	Secale cereale	Oryza glaberrima	43.71	24.04	97.55	368	forward
CNT30609809	Secale cereale	Gossypium raimondii	32.78	64.94	89.13	276	forward
CNT30713553	Secale cereale	Malus domestica golden	66.27	82.79	93.55	558	forward
CNT30627950	Secale cereale	Daucus carota	51.19	100.23	92.11	431	forward
CNT30705531	Secale cereale	Prunus avium	33.25	100	92.14	280	reverse complement

Expression of CNT30178555

Peptides detected in this lncRNA

>peptide 1 (32 aa)
MSKCIGRGAFRLRGKQPRKRGSTKRKRECRLE*

>peptide 2 (68 aa)
MNGAKRSAEAVGCQNASVGERSALEGSNRESGGRRSGSENVGLSNENIGENPMPRKPKVSSARFVHGG*

Sequence

>CNT30178555
AGAGTGCGTAATAGCTCACTGATCGAGCGCCCTTGCGCTGAAGATGAACGGGGCTAAGCGATCTGCCGAAGCTGTGGGATGTCAAAATGCATCGGTAGGG
GAGCGTTCCGCCTTAGAGGGAAGCAACCGCGAAAGCGGGGGTCGACGAAGCGGAAGCGAGAATGTCGGCTTGAGTAACGAAAACATTGGTGAGAATCCAA
TGCCCCGAAAACCCAAGGTTTCCTCCGCAAGGTTCGTCCACGGAGGGTGAGTCAGGGCCTAAGATCAGGCCGAAAGGCGTAGTCGATGGACAACAGGTCA
ATATTCCTGTACTACCCCTTGTTGGTACGGAGGGACGGAGGAGGCTAGGTTAGCCGAAAGATGGTTATAGGTTTAAGGACACAAGGTGACCCTGCTTTTT
CAGGGTAAGAAGGGGTAGAGAAAATGCCTCGAGCCGAGGCTCATACCAGGCGCTACGGCGCTGAAGTATGTAACTGATGCCATACTCCCAGGAAAAGCTC
GAACGACCTTCAACAAAAGGGTACCTGTACCCGAAACCGACACAGGTGGGTAGGTAGAGAATACCTAGGGGCGCGAGACAACTCTCTCTAAGGAACTCGG
CAAAATAGCCCCGTAACTTCGGGAGAAGGGGTGCCCCCTCACAAAAGGGGGCCGCAGTGACCAGGCCCGGGCGACTGTTTACCAAAAACACAGGTCTCCG
CAAAGTCGTAAGACCATGTATGGGGGCTGACGCCTGCCCAGTGCCGGAAGGTCAAGGAAGTTGGTGAACTGATGACAGGGAAGCCGGCGACCGAAGCCCC
GGTGAACGGCGGCCGTAACTATAACGGTCCTAAGGTAGCGAA