Detailed information on CNT30178523


BLAST search results

BLAST vs Swiss-Prot:
sp|P20143|PSAH_HORVU, E-value = 3e-33

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30693708Secale cerealeOryza sativa23.8924.4585.07134forward
CNT30240221Secale cerealeAvena sativa44.9273.4792.06252forward
CNT30656050Secale cerealeTriticum dicoccoides37.4334.290.48210forward
CNT30131217Secale cerealeLolium perenne47.4253.3192.48266forward
CNT30679781Secale cerealeTriticum urartu54.5545.689.22306forward
CNT30720193Secale cerealeTriticum spelta71.8473.8189.33403forward
CNT30338869Secale cerealeEragrostis tef14.2620.2586.2580forward
CNT30101676Secale cerealeOryza rufipogon23.8931.685.07134forward
CNT30582819Secale cerealeEchinochloa crusgalli43.8529.4680.89246forward

Expression of CNT30178523

Peptides detected in this lncRNA

>peptide 1 (31 aa)
MVHKHGARGGRLQRFRSCRVAPGWGAAGAPS*

Sequence

>CNT30178523
GCTAGAGTGACATAAACCAAAGGGGAAGAACTATAGATCGGCACTGTATCCTCTAGACAAGTAATTTAAACCGCCAGCATAGCAAAAACATGGTACAAAA
ACCAGTACAGCAATCATCAAAGAGCAAATGATCTATAGTAATTGCATGCATCATGCACGCAGCATCTTTCCAATTACTGACACGAAGTAGTACAAAGATC
AAGTATCAACAGAGCAGGTAGATAAGGGGGGAATCGACGAGATCCATGGTACACAAGCACGGGGCGAGAGGAGGAAGATTGCAGAGATTTAGATCTTGCC
GCGTGGCCCCGGGGTGGGGGGCAGCTGGGGCCCCTTCTTGATGGGGAGCAGGTCGGGGGAGGCGGTGGCGCTGACGTAGGCGAGCAGCGAGCCGCCGCCG
AGCAGCAGCACCTTGAGCAGCAGGCCGTTGTAGGGCGACGCCGCGTCGCTGCCGTACAGGTCCCACTGCCCCGTCGTGTTGGCGATGTCGTCCAGGTCGA
AGTAGACGCTCTTCTCCCCGTACTTGGCCACCACCGCCGCCCCGCGAGCCCTGCCGTTCAC