Detailed information on CNT30178172


BLAST search results

BLAST vs Swiss-Prot:
sp|P68430|H32_ONOVI, E-value = 2e-82

BLAST vs NONCODE:
NONBRAT001321, E-value = 2e-37

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30674998Secale cerealeSetaria viridis32.647.1196.65179forward
CNT30547549Secale cerealeIpomoea triloba60.4742.8978.61332forward
CNT3084857Secale cerealeVigna radiata62.1127.7779.47341forward
CNT30508427Secale cerealeSolanum lycopersicum19.4930.8482.24107forward
CNT306284Secale cerealeZea mays42.62109.3585.47234forward
CNT30610039Secale cerealeGossypium raimondii27.8717.3979.74153forward
CNT30686633Secale cerealeTriticum urartu18.5836.8299.02102reverse complement
CNT30596421Secale cerealeOryza meridionalis20.7716.2498.25114forward
CNT30148402Secale cerealeBrachypodium distachyon23.526.2796.9129forward
CNT3099660Secale cerealeOryza rufipogon27.533.3395.36151forward
CNT3018856Secale cerealeCyanidioschyzon merolae35.8885.6582.23197forward

Expression of CNT30178172

Peptides detected in this lncRNA

>peptide 1 (70 aa)
MSSSVLFWYLRISRSATVPGRKRCGFFTPPVAGADLRTALVASCFRGAMPPVDFLAVCFVRAIGTGGLAA*

>peptide 2 (31 aa)
MRRASWMSLGMMVTRLAWMAQRLVSSKSLTR*

Sequence

>CNT30178172
CAATAAGAAACTAACACATCTCTACACCTCGAGACCAGATCAGACACTGGGATTCTAGGAAGCAGCCTAGGCCCTCTCGCCACGGATGCGGCGGGCGAGC
TGGATGTCCTTGGGCATGATGGTGACGCGCTTGGCGTGGATGGCGCAGAGGTTGGTGTCCTCGAAGAGCCTGACGAGGTAGGCTTCGGCGGCCTCCTGCA
GCGCGGAGACGGCGGAGCTCTGGAAGCGGAGGTCGGTCTTGAAGTCCTGCGCGATCTCACGCACCAGGCGCTGGAAGGGGAGCTTGCGGATGAGCAGCTC
GGTGCTCTTCTGGTATTTGCGGATCTCCCGAAGCGCGACGGTGCCGGGGCGGAAGCGGTGCGGCTTCTTCACACCGCCGGTGGCCGGGGCGGACTTGCGC
ACCGCCTTGGTGGCCAGCTGCTTCCGCGGCGCCATGCCGCCGGTAGACTTCCTCGCCGTCTGCTTCGTGCGGGCCATCGGGACTGGAGGGCTTGCTGCGT
GAGCGTGGGGAGAGGACTGCTTATGCTTGGGAGATTTGGGAGTTGGAAT