Detailed information on CNT30178120


BLAST search results

BLAST vs Swiss-Prot:
sp|P0CG86|RS271_HORVU, E-value = 2e-81

BLAST vs NONCODE:
NONBNAT005965, E-value = 8e-53

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30674447Secale cerealeSetaria viridis20.6927.7895.68185forward
CNT30283510Secale cerealeTriticum aestivum38.9348.492.24348forward
CNT30220581Secale cerealeHordeum vulgare28.7534.6497.28257forward
CNT30655772Secale cerealeTriticum dicoccoides47.3251.8492.43423forward
CNT30456592Secale cerealeSaccharum spontaneum24.7226.8994.57221forward
CNT30720017Secale cerealeTriticum spelta38.8142.0196.83347forward
CNT30368046Secale cerealeSorghum bicolor28.7542.1394.16257forward
CNT30369422Secale cerealeOryza glumipatula26.0617.8194.42233forward
CNT30576569Secale cerealeOryza barthii27.5220.3394.72246forward
CNT30499448Secale cerealeDigitaria exilis25.8430.694.81231forward
CNT30116662Secale cerealeOryza nivara27.5210.8994.72246forward

Expression of CNT30178120

Peptides detected in this lncRNA

>peptide 1 (77 aa)
MRRCWSGGIPSLSWILALTLSMVSEDSTSSVMVLPVRVFTKICIFPAVGWSPPRAAAATAVRRRGWGLGWAAGWNGG*

Sequence

>CNT30178120
ACATGTAAACCCATGCATAGCTATTGGCTAGTAACACCTGCAATAAAGGGTTGACCTAAAGAACACATGTATCAACAAGATACATGTTCTATGATCTTAT
CACCATCAGAACAGCAAAGCATATAATAAAATAGCCGACATGTAATAGATTAACGTCATTAGAATGACCAAAATTTAAGCTGGCATCGCATCTCAGCAAT
AGGCGATCAAATATCCAGGAACCATAACATAATACTCCAAGATTTCAGTTTTCAAAGACAAACGGGGCACATATAAATGAGTTCGATTTGAAGAGCAATC
GCAAGCCACCTCTAAGCCTTCTGGTTGTAGACGTAGGTGAGGCCGCACTTGCCGCAGTAGTGGCGGTCGAAGTGGTTGGCCATGAAGGTCCCGGCGCCGC
ACTCGGCGTTGGGGCACTCCTTCCTGAGCCTGGTGACCTTGCCGGTGGCGTCGTCGACCTTGTAGAACTGGAGGACGGCGAGCTTCACCTTCTTGTGCTT
GTGCTTTTGCTTCTTGGGCTTGGTGTACGTCTTCTTCTTGCGCTTCTTGGCGCCACCGCGGAGGCGGAGCACCAGGTGGAGGGTCGACTCCTTCTGGATG
TTGTAGTCAGCGAGAGTACGGCCATCCTCGAGCTGCTTGCCGGCGAAGATGAGGCGCTGCTGGTCCGGCGGGATCCCCTCCTTGTCCTGGATCTTGGCCT
TGACGTTGTCGATGGTGTCCGAGGACTCCACCTCCAGCGTGATGGTCTTGCCCGTCAGGGTCTTCACGAAGATCTGCATCTTCCCGGCGGTGGGGTGGTC
GCCTCCGCGCGCTGCGGCGGCGACGGCAGTGCGGCGGCGGGGTTGGGGTTTGGGCTGGGCGGCGGGGTGGAATGGAGGCTAGGGTATGGAAGAG