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Detailed information on CNT30178072


BLAST search results

BLAST vs Swiss-Prot:
sp|Q76H85|H4_SILLA, E-value = 4e-52

BLAST vs NONCODE:
NONGMAT001327, E-value = 6e-40

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30671259Secale cerealeSetaria viridis46.4961.6194.84252forward
CNT30523218Secale cerealeSetaria italica58.357.8893.04316forward
CNT30318271Secale cerealeCorylus avellana48.1526.3181.23261forward
CNT30375418Secale cerealeArabidopsis thaliana15.8736.4487.2186forward
CNT30617135Secale cerealeSesamum indicum54.4329.4183.73295forward
CNT3042757Secale cerealePrunus dulcis49.8244.5582.59270forward
CNT30283432Secale cerealeTriticum aestivum80.4482.8993.35436forward
CNT30219776Secale cerealeHordeum vulgare45.7658.9197.98248forward
CNT30435717Secale cerealeAegilops tauschii63.2856.5197.38343forward
CNT30252403Secale cerealeAvena sativa57.5645.4194.55312forward
CNT30655811Secale cerealeTriticum dicoccoides80.4483.3792.66436forward
CNT30471244Secale cerealeSaccharum spontaneum58.4933.1295.58317forward
CNT30679384Secale cerealeTriticum urartu80.4471.9593.12436forward
CNT30720165Secale cerealeTriticum spelta31.3736.2595.88170forward
CNT30348363Secale cerealeEragrostis tef57.7556.1994.89313forward
CNT30370989Secale cerealeOryza glumipatula52.2145.2893.99283forward
CNT30645456Secale cerealeCannabis sativa35.7925.2987.63194forward
CNT30101647Secale cerealeOryza rufipogon56.2732.7395.08305forward
CNT30496126Secale cerealeDigitaria exilis60.748.3892.71329forward

Expression of CNT30178072

Peptides detected in this lncRNA

>peptide 1 (69 aa)
MRPEMRFTPPLLARRRMAGLVMPWMLSRSTFLWRLAPPLPSPLPPLPRPDMVADGPLRAADERMWGWRSG

Sequence

>CNT30178072
CAGAACACAATTGGAGACACGGTATTTCACTGAGACAAGTTTGATTTCCAGCAACATGTGCGAGTAACTTTGTTCCACGATTCAGTTTCGAAGTACAGAG
CAAATAGAGAACTAAACAAGTCGCGGTTCCATCAAACTTTTGGGATCTGCAGGGGGGTGGCGAGGAAGAGCCTAGCCGCCGAAGCCGTAGAGGGTGCGGC
CCTGGCGCTTGAGCGCGTAGACGACGTCCATGGCGGTGACGGTCTTGCGGCGGGCGTGCTCGGTGTAGGTGACGGCGTCACGGATGACGTTCTCGAGGAA
GATCTTGAGCACGCCGCGGGTCTCCTCGTAGATGAGGCCGGAGATGCGCTTCACGCCGCCCCTCCTGGCCAGGCGACGGATGGCTGGCTTGGTGATGCCC
TGGATGTTGTCGCGCAGCACCTTCCTGTGGCGCTTGGCGCCGCCCTTGCCGAGCCCCTTGCCTCCCTTGCCGCGCCCGGACATGGTCGCCGACGGTCCTC
TTCGAGCTGCTGATGAGCGAATGTGGGGTTGGAGGAGCGGTG