Detailed information on CNT30177809


BLAST search results

BLAST vs Swiss-Prot:
sp|P69668|RK23_HORVU, E-value = 2e-63

BLAST vs NONCODE:
NONBRAT006199, E-value = 0.0

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30700759Secale cerealeQuercus lobata11.3333.0884.8886reverse complement
CNT30618789Secale cerealeSesamum indicum34.784889.77264forward
CNT30199079Secale cerealePisum sativum51.9137.5689.59394forward
CNT30505842Secale cerealeNicotiana attenuata35.779.0191.14271forward
CNT3093954Secale cerealeSolanum tuberosum89.0641.388.61676forward
CNT30225530Secale cerealeHordeum vulgare35.1837.8797.75267forward
CNT30314546Secale cerealeCamelina sativa38.0832.2295.85289forward
CNT3077259Secale cerealeBrassica juncea66.6756.7992.29506forward
CNT30265789Secale cerealeBrassica rapa93.6887.7897.61711forward
CNT30609661Secale cerealeGossypium raimondii44.6619.7292.63339forward
CNT30229782Secale cerealeAnanas comosus29.1298.2297.74221forward
CNT30717682Secale cerealeMalus domestica golden10.5434.0491.2580reverse complement
CNT30360476Secale cerealeLactuca sativa92.7578.6690.06704forward
CNT3054389Secale cerealeAmborella trichopoda85.3826.6289.97648forward
CNT30149435Secale cerealeBrachypodium distachyon37.0294.9397.51281forward

Expression of CNT30177809

Peptides detected in this lncRNA

>peptide 1 (53 aa)
MIPLELRPLPQRCRPWIKLFRGLDFTCLSTVPLRVLGIGVLYKCFAVLLSILL*

>peptide 2 (51 aa)
MTSPSMPCGNDSSGITTFTTTVPSMDQIISWIGFHLPVYGSLACARDRCFV*

>peptide 3 (38 aa)
ALKGRAFPIDIGTFVPETIVSPIIAPLGCKIYLFSPSP*

>peptide 4 (37 aa)
MAIHSYHLNTKEEFDPMLYFCLSESRFDIKSILILSQ*

Sequence

>CNT30177809
CGCACTCAAAGGTAGGGCATTTCCCATTGATATAGGAACTTTTGTACCAGAAACAATAGTATCTCCAATTATAGCCCCTCTGGGATGTAAAATATATCTC
TTCTCACCATCCCCATAGTGTATGAGACAAATGTATGCATTTCGATTAGGGTCGTATTCTATGGTTACGATTCTACCAGATATGTCTTTTTGATTCCGTC
GAAAATCTATTTTACGGTATAGGCGCTTATGACCTCCCCCTCTATGCCTTGCGGTAATGATTCCTCTGGAATTACGACCTTTACCACAACGGTGCCGTCC
ATGGATCAAATTATTTCGTGGATTGGATTTCACTTGCCTGTCTACGGTTCCCTTGCGTGTGCTCGGGATAGGTGTTTTGTATAAATGTTTCGCCGTATTA
TTAAGTATTCTCCTTTAGTTTTTTTCTCTATCTAGAAGTGGAATAGAATAACCCGGTTGAAGGGTAATGATCATACGTCTGTAATGCATTGTATGGCCCA
GAATAGGTCCTATTCTTCTACCTTTTCCAGGTAGTCGATGGCTATTCACAGCTACCACCTTAACACCAAAGAAGAGTTCGACCCAATGCTTTATTTCTGT
CTTAGTGAATCCCGATTCGACATTAAAAGTATATTGATTCTTTCCCAATAAACGAAGACTTTTTTCTGTAAATACTGCGTATTTGATTCCATCCATAAAT
CGACTTTCCCTCCTATGCTCTGAGTTGCAGTATCGATAAGAATTCGAGTTCTTATTGTT