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Detailed information on CNT30177674


BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30673952Secale cerealeSetaria viridis21.5866.6797.26438reverse complement
CNT30402011Secale cerealeBeta vulgaris6.622.8385.82134forward
CNT30525798Secale cerealePhaseolus vulgaris12.4632.7794.07253forward
CNT30712184Secale cerealeGlycine max6.2621.1796.06127forward
CNT30285397Secale cerealeTriticum aestivum65.3299.6297.441326forward
CNT30221081Secale cerealeHordeum vulgare40.5440.6497.33823reverse complement
CNT30384202Secale cerealeTriticum turgidum70.9486.9698.191440forward
CNT30538116Secale cerealeBrassica napus50.0583.8396.161016reverse complement
CNT30555411Secale cerealeOryza glaberrima12.8664.7698.08261forward
CNT30658798Secale cerealeTriticum dicoccoides15.0710098.37306forward
CNT30460491Secale cerealeSaccharum spontaneum8.4284.6598.83171reverse complement
CNT3017925Secale cerealeZea mays28.9251.4599.15587forward
CNT3067405Secale cerealeLeersia perrieri20.3910094.69414reverse complement
CNT30647597Secale cerealeRosa chinensis15.3761.1893.59312reverse complement
CNT30203328Secale cerealeHelianthus annuus40.5410095.5823reverse complement
CNT30714122Secale cerealeMalus domestica golden4.4822.0396.791forward
CNT30627901Secale cerealeDaucus carota19.734.1985.5400forward
CNT30684661Secale cerealeTriticum urartu48.3723.298.68982forward
CNT30720008Secale cerealeTriticum spelta11.6397.1297.46236reverse complement
CNT30347224Secale cerealeEragrostis tef8.1866.493.37166reverse complement
CNT30595932Secale cerealeOryza meridionalis15.0723.0297.71306forward
CNT30371139Secale cerealeOryza glumipatula15.3262.8397.11311forward
CNT30409295Secale cerealePapaver somniferum27.5999.1295560reverse complement
CNT30646085Secale cerealeCannabis sativa7.3934.490150reverse complement
CNT30318666Secale cerealeAsparagus officinalis36.484.0793.91739reverse complement
CNT30149641Secale cerealeBrachypodium distachyon42.0742.3697.54854reverse complement
CNT30102660Secale cerealeOryza rufipogon16.4589.395.21334reverse complement
CNT30576588Secale cerealeOryza barthii6.429.6199.23130forward
CNT30495774Secale cerealeDigitaria exilis4.0920.9695.1883forward
CNT30604605Secale cerealeOryza punctata10.6493.5194.44216forward
CNT30603109Secale cerealeGaldieria sulphuraria323.3791.861forward

Expression of CNT30177674

Peptides detected in this lncRNA

>peptide 1 (41 aa)
MRFIVALLIASLLVDKTDSELSFLPRITCIHALQIISLEFAT

>peptide 2 (42 aa)
MSLVLLHPKRKKTSISKFSSDVAAFFLGVKKCQTKIPNKHKH*

>peptide 3 (49 aa)
MPPAFILSQDRTLHEIHSCITYSFLTRRQNRFGIVFPSKDNLYPCASDY*

>peptide 4 (57 aa)
MLIPQIPSLFLLREKKLTTRRPSTSTRHCSVRLSPIAENSPLLPPVGVWAVSQSQCG*

>peptide 5 (64 aa)
MHHLCPRSRGHPSLSRGFAACQALVRFFSLHQIKPHAPPLVRAPVNSFEFHSCERTPQAGYLMR*

>peptide 6 (75 aa)
MLSLLVFFPISMHFTAPPEIPSAPTVLQLGSFHRLSRVEPWDLTADLKSHLQTLYAQSFRITLASSVLPRLLAQS*

>peptide 7 (34 aa)
GSGADEHIELSMWLRALTAQAQRRNYQGRALPLS*

>peptide 8 (39 aa)
MTSNMASSYSVTGGVYKARERIHRRMVDQRLLAIPASCR*

Sequence

>CNT30177674
CGGGTCAGGCGCTGATGAGCACATTGAACTATCCATGTGGCTGAGAGCCCTCACAGCCCAGGCACAACGACGCAATTATCAGGGGCGCGCTCTACCACTG
AGCTAATAGCCCGTCGCGTGGGCCTCCCTTTGGGAGGCCTGCTACGCCAAAAGCGAGAAAAACTTCATCCCTTTCCTTTTGAAATCCCCATGCCGCCACA
CCACAGGGGGGACATGGGGACGCCAAAAAAGGGATCCTATCACTATCAACTAATTTGTTACGACCTAGGATAATAAGCTCATGAGCTTGGTCTTACTTCA
CCCTAAACGAAAGAAGACTTCCATATCCAAGTTTAGCTCAGATGTAGCTGCCTTCTTTTTGGGCGTGAAGAAGTGTCAAACCAAAATACCCAATAAGCAT
AAGCATTAGCTCTCCCTGAAAAGGAGGTGATCCAGCCGCACCTTCCAGTACGGCTACCTTGTTACGACTTCACTCCAGTCGCAAGCCTAGCCTTAGGCAT
CCCCCTCCTTATGGTTAAGGGTAATGACTTCAAACATGGCCAGCTCCTATAGTGTGACGGGCGGTGTGTACAAGGCCCGGGAACGGATTCACCGCCGTAT
GGTTGACCAGCGATTACTAGCGATTCCTGCTTCATGCAGGTGAGTTACAGCCTGCAATCCGAACTGAGGACGGGTTTTTGGAGTTAGCTCACCCTCGCGA
GATCGCGACCCTTTGTCCCGCCCATTGTAGCACGTGTGTCGCCCAGGGCATAAGGGGCATGATGACTTGGCCTCATCCTCTCCTTCCTCCGGCTTAACAC
CGACGGTCTGTTCAGGGTTCCAAACTCATAGTGGCAACTAAACACGAGGGTTGCGCTCGTTGCGAGACTTAACCCAACACCTTACGGCACGAGCTGACGA
CAGCCATGCACCACCTGTGTCCGCGTTCCCGAGGGCACCCCTCTCTTTCAAGAGGATTCGCGGCATGTCAAGCCCTGGTAAGGTTCTTTTCTTTGCATCA
AATTAAACCACATGCTCCACCGCTTGTGCGGGCCCCCGTCAATTCCTTTGAGTTTCATTCTTGCGAACGTACTCCCCAGGCGGGATACTTAATGCGTTAG
CTACAGCACTGCACGGGTCGAGTCGCACAGCACCTAGTATCCATCGTTTACGGCTAGGACTACTGGGGTCTCTAATCCCATTTGCTCCCCTAGCTTTCGT
CTCTCAGTGTCAGTGTCGGCCCAGCAGAATGCTTTCGTTGTTGGTGTTCTTTCCGATCTCAATGCATTTCACCGCTCCACCGGAAATTCCCTCTGCCCCT
ACCGTACTCCAGCTTGGTAGTTTCCACCGCCTGTCCAGGGTTGAGCCCTGGGATTTGACGGCGGACTTGAAAAGCCACCTACAGACGCTTTACGCCCAAT
CATTCCGGATAACGCTTGCATCCTCTGTCTTACCGCGGCTGCTGGCACAGAGTTAGCCGATGCTTATTCCTCAGATACCGTCATTGTTTCTTCTCCGAGA
AAAGAAGTTGACGACCCGTAGGCCTTCCACCTCCACGCGGCATTGCTCCGTCAGGCTTTCGCCCATTGCGGAAAATTCCCCACTGCTGCCTCCCGTAGGA
GTCTGGGCCGTGTCTCAGTCCCAGTGTGGCTGATTATCCTCTCGGACCAGCTACTGATCATCGCCTTGGTAAGCTATTACCTCACCAACTAGCTAATCAG
ACGCGAGCCCCTCCTTGGGCGGATTTATCCTTTTGCTCCTCAGCCTACGGGGTATTAGCAACCGTTTCCAGTTGTTGTTCCCCTCCCAAAGGCAGGTTCT
TACGCGTTACTCACCCGTTCGCCACTCGAAACACCACTTCCCGTTCGACTTGCATGTGTTAAGCATGCCGCCAGCGTTCATCCTGAGCCAGGATCGAACT
CTCCATGAGATTCATAGTTGCATTACTTATAGCTTCCTTACTCGTAGACAAAACAGATTCGGAATTGTCTTTCCTTCCAAGGATAACTTGTATCCATGCG
CTTCAGATTATTAGCCTGGAGTTCGCCACC