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Detailed information on CNT30177652


BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30695408Secale cerealeOryza sativa6.9821.287.0685reverse complement
CNT30438170Secale cerealeAegilops tauschii28.6571.8196.28349forward
CNT30362772Secale cerealeSorghum bicolor9.248.788.39112reverse complement

Expression of CNT30177652

Peptides detected in this lncRNA

>peptide 1 (51 aa)
PDLMAGGSFIVTRDTSGEQLGRGTKMVLYLKDDQVCSPSLLYCDLNVLMTR*

>peptide 2 (48 aa)
PQTSWLVAPSLSPVIRLGSSSAGVPRWSSTSRTTRYAVQASYIVILMS*

>peptide 3 (30 aa)
MVPCCQRRTSTGSSSGPRSCASSSLFSNGS*

>peptide 4 (39 aa)
MMVFKHCRICETFHACLLLSLSYVPVQFPIFMNSHILDK*

>peptide 5 (29 aa)
MFGCCEVPDRLALFFVMILEYISSAMQMQ*

Sequence

>CNT30177652
CCCCAGACCTCATGGCTGGTGGCTCCTTCATTGTCACCCGTGATACGTCTGGGGAGCAGCTCGGCAGGGGTACCAAGATGGTCCTCTACCTCAAGGACGA
CCAGGTATGCAGTCCAAGCCTCCTATATTGTGATCTTAATGTCTTGATGACAAGGTAGTGAACCCGCTGTTTGAGAACGGGCCGAAGCAGTTCGGCATCG
ATGGTGCCCTGCTGCCAAAGAAGGACCTCCACCGGTTCTTCAAGTGGCCCAAGGTCGTGCGCATCCAGCTCTTTGTTTTCAAATGGCAGCTAGGATTTTG
AATTGCACTTAATTATGTGATCTACTCATGTTCTGCTAATTGACCAATACATGCTTTTATGTGACACACACATATGGGCTTGATGCTTGATGTCCTTATG
CCTGATGCATGTATCATGTGACACACACATTAGTAAACCTGAATTAACTTTGACATAGTTGCTCTGTTACACCTATACAGTAGATGGCAAGATGAATAGC
TAGTGTCTGTTTAATTCAATCATGCACCTGGTAGTTTAATAGGTACTATTGATTGAATATGAATGTTATTCTTATACTCAAAGGGAACATCGATCTGCTG
TAACTTTGAATGATGGTTTTTAAACATTGTCGTATATGTGAAACATTCCATGCTTGTTTGCTGCTAAGTTTGTCATATGTGCCAGTTCAATTCCCAATTT
TTATGAATAGCCATATTCTAGATAAGTAGAATGATCTGGTTAAAAATAATAATAAGTAGAATGATAATATACTGGTGTATATTCTATTTTTATTTTAAAA
GTACTCTGTAATATTTCTTCTATCAGTGACATACCTTCTGTTCTCTTTTGAATGCTCAGATGTTTTGGATCATTGCTAAGGGAGAAGCGGGACTTGGAGA
AGAAATCTTTCCATTAAGCAGATTACATGTTTGGTTGCTGTGAAGTACCAGATAGGCTAGCTCTATTTTTTGTCATGATCCTGGAGTATATCAGCAGCGC
CATGCAAATGCAGTAGCGTTAGGTTTCTGATTCACCTTTTGTAAAAACTTTGTTAGCCCGCATTCAGTCAGTAGTAGCTCAGCCAGCCAGCCAGCCTCAA
ATAGTATTTCTGGAATGAATGGTCGTAACATAATAACATTTGCATGTTGCTTTGAAAATGTATCAGAACTGGGCTAGGCCCAAGATAGCTTGTGATGTGA
TGTGTTGTAATGTCAATG