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Detailed information on CNT30177409


BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30680513Secale cerealeTriticum urartu4.5820.5488.6853forward

Expression of CNT30177409

Peptides detected in this lncRNA

>peptide 1 (35 aa)
MKILYCTGNLLHKRSKHHLGETIGATMHSKATLHY*

>peptide 2 (38 aa)
MAAPSNGPPASMLAPSRNPTASGPMVPTWPLLGSITVA*

>peptide 3 (49 aa)
MSPNVITASSSTACQSPTPDAREKPGGGGGRRRWRRGAARPSRRGRARG*

>peptide 4 (77 aa)
MRPPSSAPKVMAGLTNSEMAARMVSGCVASSLRPMVNPRRPVVDRAAVLILNDVRRKAKASCSSLVNSILLAEDTRM*

Sequence

>CNT30177409
CAGTACAGTAGGCAACAATTAACCAACGCAATATCACGAACACCATAACAGATGAAGATACTATATTGCACTGGAAACTTATTACACAAACGGAGCAAAC
ATCACCTCGGAGAAACTATAGGGGCAACCATGCACAGCAAGGCCACCCTCCATTATTAACCAAAGTATCGCACACTAAATATAGAAACGAAAAGCCATAT
ACATACATATATAGCGATAAAGCATAGCTGCAAGTGTTGGATTTTAAGGATTTGAAGCAGCAGCTTTGGCGGTGGCGGCTAGTAGTCCTCCGGCGCGAGC
GGCTGGTGGGCGTGAGCCGCGGAAGGGCCCGAGCCAGTAGACCCAGTGGTGCCTCCACCGCCACCCGACGAGCGCCGGCCCGAAGACCCGCGCCGGGTTC
ATGGCGGCGCCATCGAACGGCCCGCCGGCGAGTATGTTAGCACCGAGCAGGAACCCCACGGCGAGCGGCCCGATGGTGCCCACGTGGCCCCTCTTGGGGT
CGATCACCGTCGCGTAGTAGGTGTACATGAGCCCGAACGTCATCACCGCCTCCAGCAGCACCGCGTGCCAATCCCCCACCCCCGACGCCAGGGAGAAACC
GGGCGGAGGAGGAGGGAGGCGACGATGGCGCCGAGGAGCTGCGCGACCCAGTAGAAGAGGGCGCGCACGAGGGTGATGCGGCCGCCGAGCAGCGCGCCGA
AGGTGATGGCCGGGTTGACGAACTCGGAGATGGCGGCGCGGATGGTGTCCGGGTGCGTCGCGTCCTCGCTGCGCCCCATGGTGAACCCCCGCCGCCCCGT
CGTCGACCGCGCCGCCGTGCTCATCTTGAACGACGTACGTCGCAAAGCAAAAGCAAGCTGCTCCTCTCTCGTAAACTCAATTCTTCTTGCCGAAGATACG
AGGATGTGACCAAGTGTGGCCGCACTGGCGTTAATACAAGTAGTAGTGTGTGAGTTGTGAGGATGGCCGCCACGAGCGCGCGTGGCTTATAACGTGGCTG
CGGGTGGAGCCGCGGTCGCTACACGTGTGCGGGAGGGCGCCCCAGAGCGGTGGCACGTCTCACGTCTGGTCAGGAGGCTCGGTTGCCCGTGCATGCCAAG
CCCTGCGTGTGCGTGTGCGGCGTGCACCCACCGCGCGCGACCATATGTAGTACGTG