Detailed information on CNT30177378


BLAST search results

BLAST vs Swiss-Prot:
sp|P69554|PSBH_SECCE, E-value = 1e-45

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30730483Secale cerealeCorchorus capsularis28.5734.0190150forward
CNT30194600Secale cerealePisum sativum40.9527.5382.33215forward
CNT30283943Secale cerealeTriticum aestivum90.198.9597.04473forward
CNT30231593Secale cerealeAnanas comosus54.2936.1785.61285forward
CNT30574487Secale cerealeVitis vinifera27.0523.0187.32142forward
CNT3053422Secale cerealeAmborella trichopoda26.675.7485.71140reverse complement

Expression of CNT30177378

Peptides detected in this lncRNA

>peptide 1 (60 aa)
MIDRNIGNKAIATPIKGVVPQPGATFPYSEFKGFSKLPAPVRFGLGLELSSTVCVAINSI*

>peptide 2 (44 aa)
MGRNIFTSYIICNCVNLKTFLKPIIYFTHIPEIPKQKNSAVELP*

Sequence

>CNT30177378
TAAACAATAAAATATGTTGACATGGGGAGGAACATATTTACTAGTTATATCATCTGCAATTGCGTGAATCTCAAGACGTTCCTCAAACCAATCATATACT
TTACTCATATTCCAGAGATACCGAAACAAAAAAATTCCGCGGTCGAACTACCATAATATCTAGAAATGTAGATCTTAAACTAGAAAGGCTTTTTTGGATG
GAAAAACTCTGACTTCCTAGTTTTAGTTAGTAGAAACCTAATTGGTTAAAATTCCGTCCAGTAAAACAGAAGAATTATAAATTTCTAAAATGATAGATAG
GAATATAGGGAATAAAGCCATTGCGACCCCCATAAAAGGAGTAGTCCCCCAACCCGGGGCGACTTTCCCATATTCCGAATTCAAGGGTTTCAGTAAACTA
CCTGCACCAGTTCGTTTTGGCCTAGGTTTAGAACTATCTTCAACGGTTTGTGTAGCCATAAATTCTATTTAATCATTGGTGTTGACTTTGTATACTATTC
CGTTGTAGTTGTAAATACACGATCT