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Detailed information on CNT30177095


BLAST search results

BLAST vs Swiss-Prot:
sp|Q8S8T4|UXS4_ARATH, E-value = 6e-31

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30700549Secale cerealeQuercus lobata12.4843.885.55173forward
CNT30499549Secale cerealeCoffea canephora13.2837.5580.98184forward
CNT3020608Secale cerealeCitrullus lanatus11.937.4181.82165forward
CNT30289293Secale cerealeTriticum aestivum10.1746.3885.11141forward
CNT30539234Secale cerealeBrassica napus13.22082.51183forward
CNT30261302Secale cerealeBrassica rapa14.3638.4982.91199forward
CNT30131528Secale cerealeLolium perenne1442.0896.39194forward
CNT30718631Secale cerealeMalus domestica golden14.2934.4984.34198forward
CNT30360575Secale cerealeLactuca sativa14.2932.8481.31198forward
CNT30570592Secale cerealeVitis vinifera13.7859.1385.86191forward
CNT3055709Secale cerealeAmborella trichopoda11.8325.0883.54164forward
CNT30102778Secale cerealeOryza rufipogon8.848.2282.79122forward
CNT30574680Secale cerealeOryza barthii13.6420.6390.48189forward
CNT30604168Secale cerealeOryza punctata12.9965.2293.89180forward
CNT30337932Secale cerealeCynara cardunculus12.9121.8384.92179forward
CNT3050773Secale cerealeCucumis sativus11.6928.8382.72162forward

Expression of CNT30177095

Peptides detected in this lncRNA

>peptide 1 (41 aa)
LKVGTTVVVHGQGFSCTLALIVATPDTCCPEKHTYTSVENE*

>peptide 2 (45 aa)
MTNAFIQNGATTSCSYLAQQTSLLLCLLSYCFQCLGWWMFGQAQA*

>peptide 3 (78 aa)
MFFFSFSIHPHNQNHSKLLPKLLLSKTRTTSNPCSAYLLPILCESVKRNKRESRRPETSLVWYPAVPTTQRLGNFYYA*

>peptide 4 (63 aa)
MRGSHASGLELVGFGEEYSPAAPPAPADGDAAPPRYVSSDAISGGVARGPPCKRRRSAGTSPQV

>peptide 5 (71 aa)
MLVVLLFSVSWLVDVWSSASIVLPPPSSFTKKGSRSTMWHISPTRIVPFQQKESNHAGGYPHLDSTGGISS*

>peptide 6 (38 aa)
MIQLGSTFFWLTSCNSKQNHHDRSGTTNETPNTITIKN*

Sequence

>CNT30177095
CTCAAGGTTGGCACCACGGTGGTAGTCCATGGTCAAGGTTTCAGCTGTACGCTTGCCCTCATCGTAGCAACTCCTGACACCTGTTGTCCAGAGAAACATA
CATACACATCAGTGGAGAATGAGTAATACGTTCTATATGTAACGAATTTAAACAGTACATGACAAATGCATTCATACAAAATGGAGCAACGACTAGCTGT
AGCTATCTAGCCCAACAAACTTCCCTCCTTTTATGCTTGTTGTCTTATTGTTTTCAGTGTCTTGGTTGGTGGATGTTTGGTCAAGCGCAAGCATAGTTTT
GCCCCCACCTTCTTCCTTTACTAAGAAGGGATCAAGATCCACCATGTGGCACATTTCACCTACCAGAATTGTCCCTTTCCAGCAGAAAGAATCAAACCAT
GCAGGAGGCTACCCCCATCTAGATTCCACGGGCGGCATCTCCAGCTAGTAAGATTCCAACACCCCATTCCCCAAATTGAGTAAACGAGGATTTCTGGTTA
TAACAGTGACCTTCAGCTCAAGAACATTTCTATTTTCAAAAGCTCATCACTGCTCTCCTTGTGCTTCCTTCTTCTGTAATACTACTACTAGTAGATACTA
TAACCCAACTGGCAATATGTTCTTTTTTTCATTCTCAATCCACCCCCACAATCAAAATCACTCGAAACTACTTCCAAAACTACTCTTGAGTAAAACTAGG
ACAACCTCAAACCCATGTTCAGCATACCTACTCCCAATATTATGCGAAAGTGTGAAACGTAATAAACGTGAGTCCAGAAGACCAGAAACATCATTAGTTT
GGTACCCAGCTGTCCCTACCACACAAAGATTGGGCAACTTCTACTATGCATGATCCAACTTGGATCTACTTTTTTTTGGCTAACCTCGTGTAACAGTAAG
CAAAATCATCATGATAGATCTGGTACAACTAATGAGACACCAAACACCATCACAATTAAGAATTAGCTGGAGGAGTATGACTGTATGAGGATCGAGGAGA
GTTCTTACCGATGGGGTTGACATTGCCCCAGTATGTCTCCACCTGAGGGTGCTGGAGGGGATCACCGTAGACCTCACTGGTGCTGGTGAGGAGGAACCTG
GCGCCGATCCTCTTGGCCAGTCCAAGCATGTTGAGTGTACCAACCACATTGGATATGATTGTCTTGACGGGGTTGTACTTGTAGTGGACGGGGGATGCGG
GGCAGCCACGCGAGCGGCTTGGAGCTGGTGGGCTTCGGGGAGGAGTACTCGCCGGCGGCGCCGCCGGCGCCCGCGGATGGGGACGCCGCCCCGCCGCGGT
ACGTGAGCTCGGACGCCATCTCCGGCGGCGTGGCTAGGGGCCCCCCGTGTAAGAGGAGGCGCAGCGCAGGGACCTCGCCGCAGGTT