Detailed information on CNT30176977


BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30378674Secale cerealeArabidopsis thaliana305.8591.06123forward
CNT30170363Secale cerealePistacia vera15.3722.5893.6563reverse complement
CNT30226414Secale cerealeHordeum vulgare29.028.396.64119forward
CNT30592658Secale cerealeMusa acuminata33.666.390.58138forward
CNT30140316Secale cerealeLolium perenne42.4413.5192.53174forward
CNT30103172Secale cerealeOryza rufipogon28.7830.7397.46118forward
CNT30578014Secale cerealeOryza barthii39.5145.7690.12162reverse complement

Expression of CNT30176977

Peptides detected in this lncRNA

>peptide 1 (42 aa)
IRIFRLLRRIPRIPKIEMIIEKVKYLIGSVSETWNVREIQIM*

Sequence

>CNT30176977
AATAAGAATATTTCGTCTATTAAGGAGGATTCCCCGAATACCTAAAATAGAGATGATCATAGAAAAAGTGAAATATTTGATAGGATCCGTTTCGGAAACA
TGGAATGTCAGAGAAATTCAAATTATGTAAGGCTTAGAAAGAAGTCCTGCGTAGAGTCCAGGGAGAGCCTATTTTGATTTTTTCTCTAGTTACCCTTTTT
CCTTCTCAAACAACGCGTTTGATTTCCTTCCTTATACCAAAGGAATTCCATCTTTCTCTTGCCGATCACATCACATCCAAGGCATTTCGTCGGAATACAT
CCTGTCTTTTCACCTTTGTAGTCCTATGCATAGTAAGTACTATAGCCTCACTAGTCCTCGTCGAGGAATCTCCTTGCCGCCCTAGAAGTTTGAGATCGTG
CCCGACCGTT