Detailed information on CNT30176909


BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30298208Secale cerealeTriticum aestivum64.5252.5893.2500forward
CNT30396960Secale cerealeTriticum turgidum62.3220.7986.96483forward
CNT30443351Secale cerealeAegilops tauschii24.774081.25192forward
CNT30662622Secale cerealeTriticum dicoccoides61.6831.293.31478forward
CNT30683520Secale cerealeTriticum urartu64.935.1388.87503forward
CNT30719891Secale cerealeTriticum spelta21.6832.9481.55168forward

Expression of CNT30176909

Peptides detected in this lncRNA

>peptide 1 (30 aa)
MHTRRTEIQDTTTNLWMMKSQELLPCRRTP*

>peptide 2 (31 aa)
FVLFSEKSFALPYPSRTLRASTTIIPLNRAP*

>peptide 3 (63 aa)
MPPFPSWTDQIPWRRWGTAGHAAGWVQRCFTGMRQEAVQAHIKTGARCTLAGQRFKTQQQTYG*

>peptide 4 (91 aa)
MRPAGCSAASPGCGKRPCRRTSRREPDAHSPDRDSRHNNKPMDDEVAGAPSMPKNTIDVGPREGAILVSTCVIYSCVILVYSCVIHNGVDR*

Sequence

>CNT30176909
GTTTTGTTTTATTTTCTGAAAAGTCCTTCGCCTTGCCTTATCCGTCGCGGACGCTTCGAGCTAGTACTACCATTATTCCACTGAACCGAGCTCCGTGAGT
GAGAGAGATCGAGAGTTCCAGAAAGTGAGCTCCGCCGTCCGGCGGTGTCGTGGTCGTGGCGACCGACGGAGGGAGCAGCCGCGGCTGCCGCTGCCTGACT
CCGGCGTGCCCAAGGCCCGACCAAGGCTGGAGCAGCTGCTCTGGCATGCCGCCGTTCCCCTCCTGGACTGACCAGATCCCTTGGAGAAGGTGGGGAACTG
CAGGGCATGCGGCCGGCTGGGTGCAGCGCTGCTTCACCGGGATGCGGCAAGAGGCCGTGCAGGCGCACATCAAGACGGGAGCCCGATGCACACTCGCCGG
ACAGAGATTCAAGACACAACAACAAACCTATGGATGATGAAGTCGCAGGAGCTCCTTCCATGCCGAAGAACACCATAGATGTTGGTCCACGTGAGGGGGC
AATCCTAGTCAGCACCTGTGTGATCTATTCCTGTGTGATCCTGGTCTATTCCTGTGTGATCCACAATGGAGTAGATAGATAAGAGAAAGGATGTTAGAGA
TTTTGGCGGCAATCTGTTGATACGCGGGAGAAAGAAAGGCAGTTTTACTGATTTTCTGTAATTAGAGAGATACGAGCTGGTTGTTTTAGTGGTGGGGTCC
ACCAGGCCACGTGTTGGCCGCTGGTTGGCCCTGCACGATAGTGCGTGCAGGGATCCCAGCAGGAGAGCCCGACCC