Detailed information on CNT3017684


BLAST search results

BLAST vs Swiss-Prot:
sp|Q2QVG9|CLPC2_ORYSJ, E-value = 8e-74

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30672873Zea maysSetaria viridis24.2730.1296100forward
CNT30272384Zea maysChenopodium quinoa78.430.2283.28323forward
CNT30404662Zea maysBeta vulgaris67.4835.5581.29278forward
CNT30631438Zea maysVigna unguiculata26.716.6286.36110forward
CNT30300179Zea maysTriticum aestivum81.3128.7186.87335forward
CNT30393350Zea maysTriticum turgidum78.1632.1787.27322forward
CNT30685087Zea maysTriticum urartu49.2738.0988.67203forward
CNT3037990Zea maysCucumis melo67.4893.2980.94278forward

Expression of CNT3017684

Peptides detected in this lncRNA

>peptide 1 (31 aa)
LDDQALDPAVATVLLIRVKSISHLPKSEASC*

>peptide 2 (33 aa)
MAAVELPLSAGHPQCILHILEVNQSAWIPCVSP*

>peptide 3 (67 aa)
MLKTSGCAFSISSKSTTVYGRRRTASVSWPPSVYPTYPGGEPISLDTVCLSMNSLISSRIIASSEPK*

Sequence

>CNT3017684
CCTCGATGACCAGGCTCTTGATCCTGCTGTAGCTACTGTCCTTCTCATCAGAGTCAAGTCAATCTCCCATCTTCCAAAATCTGAAGCATCATGTTGAAGA
CATCAGGGTGTGCCTTCTCAATCTCATCAAAGAGCACAACTGTGTATGGCCGCCGTCGAACTGCCTCTGTCAGCTGGCCACCCTCAGTGTATCCTACATA
TCCTGGAGGTGAACCAATCAGCTTGGATACCGTGTGTCTCTCCATGAATTCACTCATATCAAGCCGGATCATAGCCTCCTCAGAGCCAAAGTAATAGGCT
GCAAGAGCCTTTGCAAGCTCAGACTTCCCAACGCCGGTGGGACCAGCAAAAATAAAGCTTGCAATTGGCCTGTTGGGGTTCTTGAGACCCACACGAGCAC
GGCGGATGGAGC