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Detailed information on CNT30176425


BLAST search results

BLAST vs Swiss-Prot:
sp|Q9LZ45|H2B9_ARATH, E-value = 4e-26

BLAST vs NONCODE:
NONGMAT000269, E-value = 2e-121

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30674774Vigna angularisSetaria viridis14.9221.0887.2125forward
CNT30523142Vigna angularisSetaria italica13.8422.3185.34116forward
CNT30702570Vigna angularisQuercus lobata15.2725.690.62128forward
CNT30163372Vigna angularisPistacia vera14.220.6688.24119forward
CNT30301510Vigna angularisTriticum aestivum14.4423.9686.78121forward
CNT30224080Vigna angularisHordeum vulgare11.6928.4183.6798forward
CNT30553165Vigna angularisOryza glaberrima14.4426.385.95121forward
CNT30435705Vigna angularisAegilops tauschii14.224.4486.55119forward
CNT30656000Vigna angularisTriticum dicoccoides14.220.3886.55119forward
CNT30447591Vigna angularisSaccharum spontaneum14.221.8384.87119forward
CNT303693Vigna angularisZea mays14.234.4986.55119forward
CNT30606042Vigna angularisGossypium raimondii16.7145.988.57140forward
CNT30719869Vigna angularisTriticum spelta14.220.8486.55119forward
CNT30346527Vigna angularisEragrostis tef12.7750.7185.98107forward
CNT3052765Vigna angularisAmborella trichopoda14.9224.6188125forward
CNT30319826Vigna angularisAsparagus officinalis14.220.2489.92119forward
CNT30577496Vigna angularisOryza barthii13.8421.7283.62116forward
CNT30557628Vigna angularisPanicum hallii14.221.3686.55119forward
CNT3065708Vigna angularisSelaginella moellendorffii14.234.2984.03119forward
CNT30114697Vigna angularisEutrema salsugineum15.8721.787.22133forward

Expression of CNT30176425

Peptides detected in this lncRNA

>peptide 1 (44 aa)
MSWRLDVSADERLRCSFGFLVFLGDLNLFLSGYYLLPVKGKQSF*

>peptide 2 (37 aa)
MNGQRASLEDSWASFSKISLMKLFMMPMALLEIPMSG*

Sequence

>CNT30176425
CCCAATGTAGCCATCTTCAGAATAATAACTTATATCTAAATTTCAGTGCAGACTAAACAACAAGGTACAATCCTTGAATAGAAACAAGAGTAATATGTGA
TCATTTGACTGCGAAATCAAGAGGTTATGGATTTGTGCGGTTTGTTTCTGAGACTGCAGCTGCTACAGCTCGCAAAGAAATGAATGGCCAGCGGGCAAGT
CTAGAAGATTCCTGGGCAAGCTTCTCGAAGATATCGTTGATGAAACTGTTCATGATGCCCATGGCCTTGCTGGAGATACCAATGTCAGGGTGAACCTGTT
TCAAGACCTTGAAGATGTAGATCTTGTATGTCTCCACACTCTTCTTGCTTCTCTTCTTCTTCTTATCACCGCCAGCTCCTCCCTCCTTTGGAAGCTTCTT
TCCTGCCTTAGGCTTCTTCTCCGCCGGAGCCTTGTCTCCTACTGTGGACTTCTTCTCCTCTACAGGCTTCTTCTCTGCTGGCTTCTTCTCTGCCTTTGGT
GCCATATCTAGAGCAGAAGTTAGTGCTCTGAAAAGAGTTAGGGTTTCGAATTGAGATTCAGAAAGCTTAATGGAAAAGCTATTGAAGGTGTGAATGAAGA
AAGACTTGGAGGATTGTAAATATAGGGAAATGTTTTGTAGTTCTGATTGGCTATCGGACCTTAGCGCGGATAGATGAGCTGGCGTTTAGATGTGTCTGCT
GATGAACGGCTGAGATGTTCTTTTGGCTTCTTAGTTTTTCTTGGGGACCTAAATTTATTCTTGAGCGGGTACTACCTTTTACCAGTTAAAGGAAAACAAT
CTTTTTAACTTTAGTGTCAGAAAATCAATGAGGAGTGC