Detailed information on CNT30176038


BLAST search results

BLAST vs Swiss-Prot:
sp|O24534|EF1A_VICFA, E-value = 3e-44

BLAST vs NONCODE:
NONGMAT001702, E-value = 2e-85

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30439068Vigna angularisAegilops tauschii46.4833.785.95185forward
CNT30312075Vigna angularisCamelina sativa5035.4185.43199forward
CNT30228831Vigna angularisAnanas comosus47.9960.8384.29191forward
CNT30651330Vigna angularisRosa chinensis48.7443.9989.69194forward
CNT30203420Vigna angularisHelianthus annuus5039.6484.92199forward
CNT30420297Vigna angularisPapaver somniferum48.4929.1191.19193forward

Expression of CNT30176038

Peptides detected in this lncRNA

>peptide 1 (66 aa)
MVHLNRLNFSCQSTWCKSHHHSSRGLWTSQSCCLPQNQRLEQKESCLDCIPLSSSRRRLPSQFHHT*

Sequence

>CNT30176038
CCAGGGTGGTTCATGATGATAACCTGGGAGGTGAAGTTAGCAGCCTCCTTAGCAGGATCATCCTTGGAGTTTGAAGCAACATAACCACGCTTGAGATCCT
TAACAGCAACATTCTTCACATTGAACCCAACGTTGTCACCTGGGAGAGCTTCTGTGAGAGCTTCATGGTGCATCTCAACAGACTTAACTTCAGTTGTCAG
TCCACTTGGTGCAAAAGTCACCACCATTCCAGTCGAGGTTTGTGGACCTCTCAATCATGTTGTCTCCCTCAAAACCAGAGATTGGAACAAAAGGAATCTT
GTCTGGATTGTATCCCACTTTCTTCAAGTAGGAGGAGACTTCCTTCACAATTTCATCATACCTAGCCTTGGAGTACTTGGGTGTAGTGGCATCCATCT