Detailed information on CNT30175943


BLAST search results

BLAST vs Swiss-Prot:
sp|Q3ZJ60|PSBA_TUPAK, E-value = 4e-08

BLAST vs NONCODE:
NONVVIT000784, E-value = 5e-121

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30297892Vigna angularisTriticum aestivum11.9685.6389.73292forward
CNT30252262Vigna angularisAvena sativa12.5750.6690.88307forward
CNT30664842Vigna angularisTriticum dicoccoides12.6145.2989.94308forward
CNT30426340Vigna angularisPapaver somniferum12.5738.6292.51307forward
CNT30100296Vigna angularisOryza rufipogon8.8948.4490.32217forward

Expression of CNT30175943

Peptides detected in this lncRNA

>peptide 1 (59 aa)
MMQGTFPIHPKDFSNNLMLLHVHYQALCSYNTRIRQAVRPAWLQGQLTLTLYFKGLLIL*

>peptide 2 (42 aa)
MKSLEKEDESKYSCYTKTRSKEPTRLTLAWKKKYRKEVKTVG*

>peptide 3 (93 aa)
MFTIRPYAVTTLGFVRQFVQLGCRASSPLHYILRVFSFCNSDVIVSSLKFNEYKILIVLENSKMYWDVTSALPLSFINNKLVIINDIFPRDKL*

>peptide 4 (59 aa)
MERKDERVNVLVPKVADYVAGLGPEHLYIDGFSFFLYIENEKQILKLPLSFQNLILETI*

>peptide 5 (30 aa)
MEWREKMKGLMCWYQKLQIMLLVLVLNIYI*

>peptide 6 (39 aa)
MIDLYFLQGQIFFVSNPLRCLTIKRLFCQVNLSKNKLGT*

>peptide 7 (37 aa)
MQSSSTPQSKTGLIPPRIKGQTIFTIYYTCKVLPMVI*

Sequence

>CNT30175943
AAAGTGTGGGGACCAACGTTTATTGGAAAAAGCAAACCCAAAGATTTGGGACCAAAAGCGATTAGCAGTAACCATTGAATAAGTTTTTTCAGCTTGGGTT
GGGTTAAAAGCACAGAATGTATTTGCACCATCACCATCTTCAAATAAAGTATTTTCTACGGTTGCACCATGAATAGCGCATAGTAGTGCAGCGCCCAATA
CACCAGCAACTCCCATCATATGAAATGGGTTTAATGTCCAATTATGAAATCCTTGGAAAAAGAGGATGAATCGAAATATAGCTGCTACACCAAAACTAGG
AGCAAAGAACCAACCAGACTGACCTTAGCCTGGAAAAAAAAATACAGAAAAGAAGTCAAAACAGTGGGATAAAATTACAATGATTATTTAATCCAAGTAC
TACTTTCTGCAGACAAAAATATCTTTCAGAAACATTCTATGATACTAAAGCACATTCAGAGGAATAGATCAGAGTGAATTAATGAAAATGAATAATAAAA
TAATATCACTAGGGTAGCTTCCTCGGAATCCTTAATCTATAATCATTTATCGTTTGCTAATAAACATAGCTAGTGAGAAAGTGCTGAGAGATTAGTTTCG
ACCAAGTGCACAAATCATACAGTTGCCACGAACACAACATGCAGTCAAGTTCTACACCACAATCAAAAACAGGCTTGATTCCTCCACGTATAAAAGGACA
AACTATTTTCACTATTTATTATACTTGCAAAGTTCTTCCAATGGTCATATAAAATTTTACATGTACTCTATCACCAGTAATTACTGAAAATCACCGTATC
AGTCCAAGTTAAAAGCTGTTGGCTGGAGCATAAGGAATCAATGACCAAGCTGACGTAGTATGCAACTAAGAAGAAAATAGAACTTTATGCAACAACTAAA
GGGTACCCCAAAGTTCATAATTTATCTAATGTGATTGGAGTTTCTATATAAGAGAGTTCAGTCAGTGCTTCTTCAGACACGCAACTGACCTGTAATTATG
GTCACGATGCATATACTAACATAGGCAGTAAGTGTGCATCACACCCAGCTCTCTCTGTTAGAAAAATCTTTTGGATGCATTGCAAAAGTTCCTTGCATCA
TTTTCGTTAATAGGACCCATCATCAGAAAACATGGAATGGAGAGAAAAGATGAAAGGGTTAATGTGCTGGTACCAAAAGTTGCAGATTATGTTGCTGGTC
TTGGTCCTGAACATCTATATATAGATGGTTTCAGTTTTTTCTTATACATAGAAAACGAAAAACAAATTCTGAAACTCCCTCTTTCATTTCAAAATTTGAT
CTTAGAAACAATTTAATTCTATCTACAATCTAATTACATATACTAAAAATTAACATATCAAAAATTAACATGTCATTCACATTGTCGCTAGAACTAAAAT
TAAATGGTTTCTAGGATCAAATTTTAAAATGAAGGAAAAAATTTCAGAATTTGTTTTTCTTTGGAAAAGCTGAAACCATCTATATATATAGATGTTCAGG
GAATAAACATCTTGCAAAAAATCTGCAACTTTTGGTCCTACAGTAACCCTTTCATTTTTTCCGGATTCTCCATTCCATGTTTTCTGGGTCCCACCAACGA
AAATGATGCAAGGAACTTTTCCAATACATCCAAAAGATTTTTCTAACAATCTCATGCTACTTCATGTTCACTATCAGGCCCTATGCAGTTACAACACTAG
GATTCGTCAGGCAGTTCGTCCAGCTTGGTTGCAGGGCCAGCTCACCCTTACATTATATTTTAAGGGTCTTCTCATTTTGTAATAGTGATGTAATTGTTTC
TTCTCTCAAATTCAATGAATACAAAATTCTAATAGTCCTTGAAAATTCAAAAATGTATTGGGATGTTACTAGTGCTCTACCTCTCTCTTTTATAAATAAT
AAATTAGTCATCATAAATGACATTTTCCCTAGAGACAAATTATAGTTGAGTGGACTAATAGAATTGTGGTAGGTAATTGGATCATTGCCTCCATGACTTT
TGGCCCCAAGAGGCAAACCGTTTGATGCATCAGATGGGTAACTATAAAATTGCGTCACATAATTCCAATCCATACTCTTAATATATGATAGATTTGTACT
TCTTACAAGGTCAGATTTTTTTTGTTTCAAATCCTTTAAGATGTCTGACTATAAAAAGGCTGTTTTGCCAAGTGAATTTAAGTAAAAACAAGTTAGGGAC
GTGATTTCTCTAACCTCAAAAAACATATTCGGCATTTCAATCGGAAAACCCTGCTTCCTATAGATTTCTGTATGTAAAAGATCCCTTTCCCCGTATTCAA
CTTAATTATTTCAATTGACTATGCTAAAAAATATTCATCTGGTGAGGGAAGTGTTTGTACATCATTGTTAAGAAGAACTAGGAAGCACAGAAGGTAACCT
CATAAGCAGCTAAAAACAAATTCAGTTTCGGCACAGGTCTAC