Detailed information on CNT30175658


BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30675629Vigna angularisSetaria viridis29.1519.5788.8972forward
CNT30517803Vigna angularisJuglans regia45.7511.9288.5113forward
CNT30701822Vigna angularisQuercus lobata44.9434.1589.19111forward
CNT30282455Vigna angularisChenopodium quinoa28.745.0891.5571forward
CNT3071730Vigna angularisQuercus suber44.9427.3489.19111forward
CNT3047606Vigna angularisPrunus dulcis36.4410.3686.6790forward
CNT30123042Vigna angularisPhyscomitrium patens30.3616.9786.6775forward
CNT30566785Vigna angularisActinidia chinensis48.5845.1187.5120forward
CNT30311909Vigna angularisCamelina sativa20.2410.579450forward
CNT30468549Vigna angularisSaccharum spontaneum37.254086.9692forward
CNT302051Vigna angularisZea mays26.7229.0786.3666forward
CNT30606370Vigna angularisGossypium raimondii41.348.883.33102forward
CNT30652736Vigna angularisRosa chinensis36.4415.5488.8990forward
CNT30625473Vigna angularisDaucus carota42.5131.9182.86105forward
CNT30351629Vigna angularisEragrostis tef36.8427.7484.6291forward
CNT30366950Vigna angularisSorghum bicolor34.8210.0588.3786forward
CNT30596757Vigna angularisOryza meridionalis37.2539.6685.8792forward
CNT30371008Vigna angularisOryza glumipatula35.2235.2287.3687reverse complement
CNT30107294Vigna angularisOryza longistaminata37.6534.1987.193forward
CNT30103405Vigna angularisOryza rufipogon29.5534.7687.6773reverse complement
CNT30558210Vigna angularisPanicum hallii37.2544.6688.0492forward

Expression of CNT30175658

Peptides detected in this lncRNA

>peptide 1 (30 aa)
MEFEIQEKKESQKMQKMEMKQEKCSECEVK*

>peptide 2 (49 aa)
IRGIANKFTKENLLVAVEGVDDKTEKLVDLRLKSERLGLRHFGSAFYGV*

Sequence

>CNT30175658
ATCAGAGGCATTGCTAATAAGTTCACGAAGGAAAATCTCCTTGTTGCTGTAGAAGGTGTTGATGATAAGACTGAGAAGCTGGTTGATCTCCGCCTGAAAA
GCGAACGTCTCGGTCTCCGACATTTTGGATCTGCCTTCTATGGAGTTTGAGATTCAGGAAAAGAAAGAGTCGCAAAAGATGCAAAAGATGGAAATGAAGC
AAGAGAAATGTTCGGAGTGTGAAGTTAAGTAGGAGGGCTGGGCTAGG