Detailed information on CNT30175657


BLAST search results

BLAST vs Swiss-Prot:
sp|Q04716|RT03_PETHY, E-value = 1e-60

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT3020893Vigna angularisCitrullus lanatus57.7716.5192.36275forward
CNT30193918Vigna angularisSecale cereale36.1328.0690.12172forward
CNT30223517Vigna angularisHordeum vulgare30.8842.9891.16147forward
CNT30479543Vigna angularisArabidopsis halleri37.8234.6286.11180forward
CNT30336644Vigna angularisCynara cardunculus79.4125.1286.51378forward

Expression of CNT30175657

Peptides detected in this lncRNA

>peptide 1 (70 aa)
MVVFVVPAKRRSFAKRMMWVNLFLASAKHFFSLVEVCTNKVMRQSILLSKPLPCFAPPIVDGSATPSATK*

>peptide 2 (30 aa)
MVQPRPVPRNDLELRRDRNAFGSFYSISIA*

Sequence

>CNT30175657
AAAGACGGGCGCACTGCAGGGAGGGTCCTTTTAAATAGATGATTCGTCGGGCCGTCGGAGCGGCTCAAGAGAAAGGTTCTTATCAAAACCAACTCTATCC
CTTGGAAAGAAAAAGGTAGCACCGAAGAAAGGAAAGAGCGAGATGGTTGTTTTTGTTGTTCCCGCAAAGCGAAGATCGTTCGCCAAGCGAATGATGTGGG
TCAACCTCTTTTTGGCTTCGGCCAAACACTTTTTCTCGCTGGTCGAGGTTTGTACAAATAAAGTGATGCGACAAAGTATTCTCTTATCTAAGCCTCTTCC
TTGTTTCGCTCCCCCCATCGTTGATGGTTCAGCCACGCCCAGTGCCACGAAATGATTTAGAACTACGACGGGATCGAAATGCATTTGGTTCTTTCTATTC
AATAAGTATTGCATGACCGAATAATTCAAAGAGGGGCGCACTGCAGGGAGGGTCCTTTTAAATAGATGACTCGTCG