Detailed information on CNT3017561


BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE:
NONCQUT005543, E-value = 2e-122

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30680054Zea maysTriticum urartu73.7448.1996.93879reverse complement

Expression of CNT3017561

Peptides detected in this lncRNA

>peptide 1 (36 aa)
MGHVESRVNQQGPPCKAKYSWVTDRGGGAKTARRFA*

>peptide 2 (35 aa)
MPRAEVRVPSAAALKYEPRGLAIASPRGSYQALRR*

>peptide 3 (32 aa)
MSKCIGRGAFRLRGKQTRKRGSTKRKRECRLE*

>peptide 4 (68 aa)
MNGAKRSAEAVGCQNASVGERSALEGSKRESGGRRSGSENVGLSNENIGENPMPRKPKVSSARFVHGG*

>peptide 5 (55 aa)
WIPRHPETRKGVASDEMLRGVENKHRSGDSQIAQPFELPAESMSTQETTWRTETS*

Sequence

>CNT3017561
GGTGGATACCTAGGCACCCAGAGACGAGGAAGGGCGTAGCAAGCGACGAAATGCTTCGGGGAGTTGAAAATAAGCATAGATCCGGAGATTCCCAAATAGC
TCAACCTTTTGAATTGCCTGCTGAATCCATGAGCACGCAAGAGACAACCTGGCGAACTGAAACATCTTAGTAGCCAGAGCAAAAGAAAGCAAAAGTGATT
CCCGTAGTAGCGGCGAGCGAAATGGGAGCAGCCTAAACCGTGAAAACGGGGTTGTGGGAGAGCAATACAAGCGTTGTGCTGCTAGGCGAAGCGGTTGAGT
GCCGCACCCTAGATGGCTAAAGTCCAGTAGCCGAAAGCATCACTAGCTTACGCTCTGACCCGAGTAGCATGGGGCACGTGGAATCCCGTGTGAATCAGCA
AGGACCACCTTGCAAGGCTAAATACTCCTGGGTGACCGATAGAGGTGGGGGTGCAAAGACAGCCAGGAGGTTTGCCTAGAAGCAGCCACCCTTTAAAGAG
TGCGTAATAGCTCACTGATCGAGCGCCCTTGCGCTGAAGATGAACGGGGCTAAGCGATCTGCCGAAGCTGTGGGATGTCAAAATGCATCGGTAGGGGAGC
GTTCCGCCTTAGAGGGAAGCAAACGCGAAAGCGGGGGTCGACGAAGCGGAAGCGAGAATGTCGGCTTGAGTAACGAAAACATTGGTGAGAATCCAATGCC
CCGAAAACCCAAGGTTTCCTCCGCAAGGTTCGTCCACGGAGGGTGAGTCAGGGCCTAAGATCAGGCCGAAAGGAGTAGTCGATGGACAACAGGTCAATAT
TCCTGTACTACCCCTTGTTGGTACGGAGGGACGGAGGAGGCTAGGTTAGCCGAAAGATGGTTATAGGTTTAAGGACACAAGGTGACCCTGCTTTTTCAGG
GTAAGAAGGGGTAGAGAAAATGCCTCGAGCCGAGGTCCGAGTACCAAGCGCTGCAGCGCTGAAGTATGAGCCCCGTGGACTAGCCATTGCTTCTCCACGA
GGCTCATACCAGGCGCTACGGCGCTGAAGTATGTAACCCATGCCATACTCCCAGGAAGAGCTCGAACGACCTTCAACAAAAGGGTACCTGTACCCGAAAC
CGACACAGGTGGGTAGGTAGAGAATACCTAGGGGAGCGAGACAACTCTCTCTAAGGAACTCGGCAAAATAGCCCCGTAACTTCGGGAGAAGG