Detailed information on CNT3017553


BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30672771Zea maysSetaria viridis38.7630.392100forward
CNT30179357Zea maysSecale cereale41.8611.1393.52108forward
CNT30386304Zea maysTriticum turgidum41.8620.0792.59108forward
CNT30553525Zea maysOryza glaberrima45.3516.5394.02117forward
CNT30720672Zea maysTriticum spelta23.6411.5791.861forward
CNT30349409Zea maysEragrostis tef47.2910.294.26122forward
CNT30596052Zea maysOryza meridionalis45.3521.4794.02117forward
CNT30101149Zea maysOryza rufipogon45.3521.4794.02117forward
CNT30604057Zea maysOryza punctata37.2124.1294.7996forward

Expression of CNT3017553

Peptides detected in this lncRNA

>peptide 1 (30 aa)
MIKDHGQGQGHRRTGCRRPSWRRCQHGAWS*

>peptide 2 (84 aa)
KRIKKKISSKTRRHTDGASGLEAKSRGWKDDKRPRAGAGAPANGLQAAQLAALPTRGMELILVKVSTLKVAPHMAPSLSTRGMAL

Sequence

>CNT3017553
AAAAAGGATAAAAAAAAAGATTTCTAGTAAAACAAGGCGGCACACAGATGGAGCCTCTGGTTTAGAAGCAAAGTCTCGTGGTTGGAAGGATGATAAAAGA
CCACGGGCAGGGGCAGGGGCACCGGCGAACGGGTTGCAGGCGGCCCAGTTGGCGGCGCTGCCAACACGGGGCATGGAGTTGATCTTGGTGAAGGTGTCGA
CCTTGAAGGTGGCGCCGCACATGGCGCCCTCGCTGTCGACGCGCGGCATGGCCTTGAG