Detailed information on CNT3017528


BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE:
NONGMAT000067, E-value = 5e-33

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30237809Zea maysBrassica oleracea43.9124.6885.4137forward

Expression of CNT3017528

Peptides detected in this lncRNA

>peptide 1 (42 aa)
LEKSGCMDSSWGCLESMHVKGCTWLMKDCSSEVGLYEGDVGL*

>peptide 2 (29 aa)
LGEVWLYGLILGLLGEYACEGLYLADEGL*

>peptide 3 (38 aa)
MVKLDCRMAMWGCKRVMWGCMLVRLGYKLVRWGCSLVM*

Sequence

>CNT3017528
CTTGGAGAAGTCTGGCTGTATGGACTCATCCTGGGGCTGCTTGGAGAGTATGCATGTGAAGGGCTGTACTTGGCTGATGAAGGATTGTAGCTCGGAGGTA
GGGCTGTATGAAGGTGATGTAGGGCTATAAGATGGTGAAGTTGGACTGTAGGATGGCGATGTGGGGCTGTAAGCGGGTGATGTGGGGCTGTATGCTGGTG
AGGTTGGGCTATAAACTGGTGAGGTGGGGCTGTAGCTTGGTGATGTAGGACTATAGCTAGGAGATGTAGGGCTGTAGCTTGGTGATGTAGGGCTGTAGCT
TGGTGATGTTGG