Detailed information on CNT30175006


BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE:
NONPOPT001132, E-value = 1e-31

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30200548Vigna angularisPisum sativum16.6726.7183.7286forward
CNT30502101Vigna angularisNicotiana attenuata34.537.8785.39178forward
CNT3091075Vigna angularisSolanum tuberosum27.7137.7390.21143forward
CNT30719929Vigna angularisTriticum spelta32.9529.2684.12170forward
CNT3022534Vigna angularisPopulus trichocarpa37.660.0684.54194forward
CNT30332063Vigna angularisDioscorea rotundata37.647.3282.99194forward
CNT3050381Vigna angularisCucumis sativus30.8150.6489.31159forward

Expression of CNT30175006

Peptides detected in this lncRNA

>peptide 1 (80 aa)
MVSHEGSSTALSVGALLAKPLHLSGIVNLIELQDSELHLLVLVLDLLSHEGSSTALSVGALLAEPLHLSGIVNLIELQDSE

>peptide 2 (35 aa)
INRIFQFQPTTTIYYITLPTYHRTINHHSNLIQTT*

Sequence

>CNT30175006
GCATAAACAGGATTTTCCAATTTCAACCTACAACAACCATTTATTATATCACACTCCCGACATATCATAGAACAATAAACCACCATAGCAATTTGATACA
AACTACTTAACAAAAATATGTATGTGAATAATAGGTAATCCAAATCGATAAAGTATTTGATAAAAATTTAATTAAAAACGTCGCATCACTAAACGAACAA
AACACGAAATTAGGCATCCGCCTTCTGGTATACATAAGTGAGACCGCACTTGCCGCAGTAGTGGCGATCAAAATGGTTAGCCATGAAGGTTCCAGCACCG
CACTCAGCGTTGGGGCACTCCTTGCGAAGCCTCTGCACCTTTCCGGAATCGTCAACCTTATAGAACTGCAAGACAGCGAGCTTCACCTTCTTGTGCTTGT
GCTTGATCTTCTTAGCCATGAAGGTTCCAGCACCGCACTCAGCGTTGGGGCACTCCTTGCGGAGCCTCTGCACCTTTCCGGAATCGTCAACCTTATAGAA
CTGCAAGACAGCGAGC