Detailed information on CNT30174954


BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30697161Vigna angularisOryza sativa24.6130.8892.0663reverse complement
CNT30523179Vigna angularisSetaria italica21.0919.5788.8954reverse complement
CNT30553408Vigna angularisOryza glaberrima24.618.2492.0663reverse complement
CNT30349956Vigna angularisEragrostis tef25.3925.190.7765reverse complement
CNT30596024Vigna angularisOryza meridionalis24.6123.4292.0663forward
CNT30370879Vigna angularisOryza glumipatula24.6127.2792.0663forward
CNT30322630Vigna angularisAsparagus officinalis49.226.2381.75126forward
CNT30100013Vigna angularisOryza rufipogon24.6112.5593.6563forward
CNT30578099Vigna angularisOryza barthii24.6111.3392.0663forward
CNT30116624Vigna angularisOryza nivara24.616.0992.0663forward

Expression of CNT30174954

Peptides detected in this lncRNA

>peptide 1 (46 aa)
VTPRQLTGTIDCPHRSPPGFPVCFVLTRTLSGKTSRKVTHPRIAPG*

>peptide 2 (84 aa)
CNAPATHRDHRLPPQITTRLSSVLCPHSHTFWENFPEGHPSQNCSRLSTLNHGVLMSQATEKQMHFGDMSSQINSFKLSFICIVP

Sequence

>CNT30174954
TGTAACGCCCCGGCAACTCACAGGGACCATCGACTGCCCCCACAGATCACCACCAGGCTTTCCAGTGTGCTTTGTCCTCACTCGCACACTTTCTGGGAAA
ACTTCCCGGAAGGTCACCCATCCCAGAATTGCTCCAGGCTAAGCACGCTTAACCATGGAGTTCTTATGAGTCAGGCTACCGAAAAGCAAATGCATTTTGG
TGATATGAGTAGTCAAATCAATTCCTTTAAGCTATCCTTCATCTGTATAGTCCCAT