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Detailed information on CNT30174824


BLAST search results

BLAST vs Swiss-Prot:
sp|Q8VZC0|UXS1_ARATH, E-value = 6e-135

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30522345Vigna angularisSetaria italica42.9554.482.35408forward
CNT30530404Vigna angularisEucalyptus grandis26.4270.782.07251forward
CNT30318541Vigna angularisCorylus avellana43.2687.6383.94411forward
CNT30703138Vigna angularisQuercus lobata2850.7681.2266forward
CNT30500451Vigna angularisCoffea canephora23.5820.9983.04224forward
CNT30615836Vigna angularisSesamum indicum24.2160.0580.43230forward
CNT3021362Vigna angularisCitrullus lanatus28.1141.0180.9267forward
CNT30727603Vigna angularisCorchorus capsularis3465.3882.35323forward
CNT3068683Vigna angularisQuercus suber32.7463.2180.71311forward
CNT30524728Vigna angularisPhaseolus vulgaris2238.779.9209forward
CNT30630546Vigna angularisVigna unguiculata48.6369.7995.67462forward
CNT30486152Vigna angularisOlea europaea19.6820.6682.89187forward
CNT30504810Vigna angularisNicotiana attenuata23.4734.2582.96223forward
CNT30637312Vigna angularisCapsicum annuum20.9546.2883.92199forward
CNT3091042Vigna angularisSolanum tuberosum17.2644.9380.49164forward
CNT30182233Vigna angularisSecale cereale43.3766.2481.07412forward
CNT30289293Vigna angularisTriticum aestivum82585.5376forward
CNT30223417Vigna angularisHordeum vulgare20.4285.4682.99194forward
CNT30590847Vigna angularisMusa acuminata43.0589.579.71409forward
CNT3084565Vigna angularisVigna radiata2212.3778.95209forward
CNT30539234Vigna angularisBrassica napus31.4732.6879.6299forward
CNT30510868Vigna angularisSolanum lycopersicum20.4293.2782.99194forward
CNT30143812Vigna angularisMedicago truncatula29.7922.8884.45283forward
CNT30244810Vigna angularisAvena sativa43.3750.9979.13412forward
CNT30261302Vigna angularisBrassica rapa31.4757.8379.93299forward
CNT30447453Vigna angularisSaccharum spontaneum42.9571.281.13408forward
CNT30134072Vigna angularisLolium perenne43.3756.7579.85412forward
CNT3066796Vigna angularisLeersia perrieri32.1178.4181.31305forward
CNT30653881Vigna angularisRosa chinensis42.2137.5579.8401forward
CNT30718631Vigna angularisMalus domestica golden27.7945.9981.44264forward
CNT30339698Vigna angularisEragrostis tef41.5831.9880395forward
CNT30477892Vigna angularisArabidopsis halleri32.1128.578.69305forward
CNT30595456Vigna angularisOryza meridionalis41.3768.9580.41393forward
CNT30355562Vigna angularisLactuca sativa29.1647.5181.95277forward
CNT30424172Vigna angularisPapaver somniferum23.6832.2380.89225forward
CNT30570592Vigna angularisVitis vinifera23.7969.9780.09226forward
CNT3055709Vigna angularisAmborella trichopoda18.2126.4581.5173forward
CNT30105598Vigna angularisOryza longistaminata41.4757.1879.44394forward
CNT30319856Vigna angularisAsparagus officinalis11.5839.2988.18110forward
CNT30574680Vigna angularisOryza barthii3435.2679.88323forward
CNT30579496Vigna angularisEchinochloa crusgalli40.5398.4780.26385forward
CNT30499107Vigna angularisDigitaria exilis41.0599.7480.26390forward
CNT30115589Vigna angularisOryza nivara3422.6379.88323forward
CNT30594668Vigna angularisEragrostis curvula31.3788.4382.55298forward
CNT30604168Vigna angularisOryza punctata28.6398.5581.62272forward
CNT30550386Vigna angularisOryza brachyantha20.7471.6481.22197forward
CNT30336663Vigna angularisCynara cardunculus19.0538.7686.19181forward
CNT30723923Vigna angularisLupinus angustifolius21.5810086.83205forward
CNT3064271Vigna angularisSelaginella moellendorffii30.9553.4579.25294forward

Expression of CNT30174824

Peptides detected in this lncRNA

>peptide 1 (93 aa)
MTMTSSPRAMSLSTRWLPTKPAPPVTTMRGLRPVIPTGTRPVWGPDNRVRPERGRKLWDSGGPKRESVGWMMKNVEPMRIPTRMNKRRCSLRR*

>peptide 2 (89 aa)
RSLTYWIDISPVSLLLRMLQRITVDLTGASKQKPSPNSLRKAQHVKRPHHIRYDGLHRVVLVMHRRSGTREVVDLIHLEENRFNDVMAN*

>peptide 3 (30 aa)
MFSLTAKQNFLSPFISLHDLFFFFYDAQCE*

Sequence

>CNT30174824
TCGCTCACTCACCTATTGGATTGACATTTCCCCAGTAAGTCTCCTTCTGAGGATGCTCCAGCGGATCACCGTAGACCTCACTGGTGCTAGTAAGCAGAAA
CCTAGCCCCAATTCTCTTCGCAAGGCCCAACATGTTAAGCGTCCCCATCACATTCGATATGATGGTCTTCACAGGGTTGTACTTGTAATGCACCGGCGAA
GCGGGACACGCGAGGTGGTAGATCTGATCCACCTCGAGGAGAATCGGTTCAACGACGTCATGGCGAATTAGCTCGAACCTAGGGTTGCCGAAGAGGTGCA
CCAGGTTCTCCTTTCTCCCGGTGAAGAAATTGTCAATGACGATGACGTCGTCCCCACGCGCGATGAGCTTGTCGACGAGGTGGCTCCCGACGAAGCCCGC
GCCACCGGTGACGACGATGCGGGGCCTTCGGCCGGTGATCCCGACGGGGACCCGGCCGGTGTGGGGCCCGGACAATCGAGTGAGGCCAGAGCGGGGGAGG
AAGTTATGGGACTCGGGTGGGCCTAAGCGGGAGAGCGTGGGCTGGATGATGAAAAACGTGGAGCCGATGAGAATCCCGACGAGGATGAACAAAAGACGCT
GCTCTCTGAGGAGATAGTTGATGGATCTGGGGAGGGATCTGGTGTGCTTGATGGATTTGGGGGAGTAGGGTGAGGCCTCGCTGCTCCCCATCTCTTCCTC
CCTTCTGTGATTCAGACTGGGTTGCTTGTGAAGCTGTTTCATCTTGCGGTTAAAAACAAAACGCAACGCTACGCGTGTTTTTGACCAACGATGTTTTCTT
TAACTGCCAAACAGAATTTTCTTTCTCCCTTTATTTCTTTACACGATCTTTTTTTTTTCTTTTATGATGCACAGTGCGAATGAATGCAGACTGTTATAGG
GGGTACTCTGCCCTCGCCATGGATGCCACTTTTTCTATATTACAATCGAT