CANTATAdb - search

Detailed information on CNT30174736

BLAST search results

BLAST vs Swiss-Prot:
sp|P0CH33|UBQ11_ARATH, E-value = 6e-101

BLAST vs NONCODE:
NONTPRT002153, E-value = 4e-86

Results of reciprocal BLAST search (potential orthologs)

Target	Query species	Target species	Query coverage (%)	Target coverage (%)	Identity	Alignment length (nt)	Orientation
CNT3050944	Vigna angularis	Cucumis sativus	40.64	48.39	86.72	467	forward

Expression of CNT30174736

Peptides detected in this lncRNA

>peptide 1 (31 aa)
MVSELSTSRVMVLPVRVFTKICMPPRRRRTR*

>peptide 2 (33 aa)
MNFMEKNKIFGQGINHTRRLLMDLKIFFEIKNC*

>peptide 3 (39 aa)
MHIIYLKFHYNKGTIQSNTNQIYLRVNKDPIHSPILKMS*

>peptide 4 (56 aa)
MRRCWSGGIPSLSWILAFTLSIVSELSTSRVMVFPVRVLTKICICGVKNHKRITMM*

Sequence

>CNT30174736
AATTAGTTATTAATAACAAAAGTAAATCATTCCATTAGGCAACATAAATTAATAACATAATGCATATTATATATCTAAAGTTTCATTATAACAAAGGGAC
AATACAGTCCAACACAAACCAAATTTATTTAAGGGTCAATAAAGACCCAATCCACAGTCCGATTTTGAAGATGTCTTGAAAGCAGTAAAAAACAGAGGTC
AGCACAGTCTAAAAGCCCCCACGAAGACGCAGAACAAGGTGAAGGGTGGATTCCTTCTGAATGTTGTAATCAGCAAGGGTCCTTCCATCCTCCAGCTGTT
TTCCGGCGAAGATCAACCTCTGCTGGTCCGGGGGAATTCCCTCCTTGTCCTGGATCTTAGCCTTGACGTTGTCGATGGTGTCAGAGCTCTCAACCTCGAG
GGTGATGGTCTTGCCGGTGAGAGTCTTCACAAAGATCTGCATGCCACCGCGGAGACGGAGAACAAGGTGAAGGGTTGATTCCTTCTGGATGTTGTAGTCG
GCGAGGGTGCGGCCATCCTCGAGCTGTTTTCCAGCGAAGATGAGACGTTGCTGGTCAGGGGGAATTCCTTCCTTATCCTGGATCTTGGCCTTCACGTTGT
CAATAGTATCGGAGCTCTCGACCTCGAGAGTGATGGTCTTTCCGGTAAGGGTCTTAACGAAGATCTGCATCTGCGGAGTAAAAAACCACAAACGAATCAC
AATGATGTAATTGAACAGCTATCCGACTGAATCAAGTAAATCTCAAGAACAGATCTGATGAATTTCATGGAAAAAAACAAAATCTTTGGTCAGGGGATAA
ACCACACAAGGCGGTTGTTAATGGATCTGAAAATTTTCTTTGAAATAAAAAACTGTTAACGGATCTGAACAATTTCTTCAAAAAAAATAATTTATAAAGG
ACTACAAAAAAAATTTCAAGACGCTATTGTAAAAGGGAAAGAAAAGATGGATGAAACTGTACAAACCCTATCTTGAACACAACAAGCTAATCGAAAACAC
GATAGTTCACGGAACTAATGGATAACAAAAACGAACCTTGAGGGGAGAGGTAGGGAACTGCGCAAAGAGAATGAGCTAGTTTGTTTTGAAATGCACTGTG
AAGAGAAACGGGGGGTGTGGGCCTTTTTATAGCTAAAGGGGTGGAATCC