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Detailed information on CNT30174403


BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30678495Vigna angularisSetaria viridis13.3823.4384.9593forward
CNT30641545Vigna angularisNymphaea colorata33.5327.4186.7233forward
CNT30513785Vigna angularisJuglans regia32.0935.8583.86223forward
CNT30371574Vigna angularisArabidopsis thaliana24.4632.8881.18170forward
CNT30618119Vigna angularisSesamum indicum23.0231.1980.62160forward
CNT3019440Vigna angularisCitrullus lanatus14.5326.6584.16101forward
CNT30525128Vigna angularisPhaseolus vulgaris26.4742.6995.11184forward
CNT30629169Vigna angularisVigna unguiculata46.7663.690.77325forward
CNT30709011Vigna angularisGlycine max33.5325.6688.41233forward
CNT3091235Vigna angularisSolanum tuberosum23.0213.3680160forward
CNT30188078Vigna angularisSecale cereale26.6219.0982.7185forward
CNT30300474Vigna angularisTriticum aestivum26.1916.5682.42182forward
CNT30224070Vigna angularisHordeum vulgare9.7830.4988.2468forward
CNT30394054Vigna angularisTriticum turgidum26.1918.482.97182forward
CNT30562386Vigna angularisActinidia chinensis33.5342.6782.4233forward
CNT3085970Vigna angularisVigna radiata79.2873.5696.19551forward
CNT30540845Vigna angularisBrassica napus22.332.781.29155forward
CNT30664762Vigna angularisTriticum dicoccoides26.1930.6982.97182forward
CNT30313614Vigna angularisCamelina sativa24.4643.8180170forward
CNT30264705Vigna angularisBrassica rapa23.3119.3180.86162forward
CNT308929Vigna angularisZea mays31.873.4283.26221forward
CNT30716553Vigna angularisMalus domestica golden20.5821.7783.92143forward
CNT30684883Vigna angularisTriticum urartu23.1726.7483.23161forward
CNT30620828Vigna angularisCajanus cajan26.4784.0292.39184forward
CNT3038681Vigna angularisCucumis melo18.7132.4281.54130forward
CNT30579105Vigna angularisEchinochloa crusgalli26.1917.2385.16182forward

Expression of CNT30174403

Peptides detected in this lncRNA

>peptide 1 (55 aa)
MMLLLLSELLGVALQTMVGRSLEPSLGRRAAGLDRLVGIVSDMVGCLERVCENGV*

>peptide 2 (28 aa)
MCLPRASYFNQHTPSFLSSYILAFLFIFS

>peptide 3 (35 aa)
RNVDDDLLHRRFFLIPDGNKVAPTHPPDPPGDVQE*

>peptide 4 (37 aa)
MYRNRNPGVMNSPQCLWSPLTIRCGSPSAPHRSPCFA*

Sequence

>CNT30174403
GAGGAACGTCGATGATGATCTCCTTCATCGTCGGTTTTTTCTCATCCCTGATGGCAATAAGGTAGCTCCGACCCACCCACCCGATCCACCCGGCGATGTA
CAGGAATAGGAACCCAGGAGTGATGAACTCGCCCCAGTGCCTCTGGTCCCCGCTCACGATCAGGTGCGGTAGCCCGTCGGCGCCGCACAGAAGCCCCTGC
TTCGCGTAGTTGTCGAACCGCCGCTTCGCCTTCAGATCGGAGGATATGATGTTGTTGTTGTTGTCGGAGTTGTTGGGAGTGGCACTGCAGACGATGGTGG
GACGCAGTTTGGAGCCTAGTTTGGGGCGGAGGGCGGCGGGCTTGGATAGATTGGTGGGAATTGTGAGCGACATGGTTGGTTGTTTGGAAAGGGTGTGTGA
GAATGGAGTGTAGGGTGGTAAGAGAAGTAAGAAGGAAAGGTCTTTAGATTCTGATAGAAGCAGATTGGTGGTTGTTAACTAAGGAGAGGGTTATGGATTG
TGGATAAGGTTAGGAGAGTGAAGAAGCTGAGTTGGATTCTCGTTATTGGTTGTGCCTCAGTGCCACTCTCTCATCTGTTATCTACTTTGGGTCGGATAAG
CGAACGTCATGTGCCTGCCTCGTGCCTCATACTTTAATCAACACACTCCTTCCTTCCTTTCTTCTTATATCTTAGCATTCCTATTCATATTTTCC