« Back to Trifolium pratense search


Detailed information on CNT30173795


BLAST search results

BLAST vs Swiss-Prot:
sp|P0CH05|UBI2P_PETCR, E-value = 2e-73

BLAST vs NONCODE:
NONGMAT000502, E-value = 4e-72

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30276117Trifolium pratenseChenopodium quinoa29.5421.8891.93161forward
CNT30144077Trifolium pratenseMedicago truncatula28.4421.7190.32155forward

Expression of CNT30173795

Peptides detected in this lncRNA

>peptide 1 (49 aa)
MRRCWSGGIPSLSWILALTLSMVSEDSTSRVMVLPVRVFTKICMMMNLV*

>peptide 2 (74 aa)
INLYIAATTEPENKVKRRFFLNIIISKSPSIFKLFTSKDQSLLIRRNSFFILNLCLHVVDCVRRFDFECDGFAS*

>peptide 3 (30 aa)
MVLPVRVLTKICMPPRRRRTRWSVDSFWML*

Sequence

>CNT30173795
ATCAACTTATACATTGCCGCCACCACGGAGCCTGAGAACAAGGTGAAGCGTAGATTCTTTCTGAATATTATAATCAGCAAGAGTCCTTCCATCTTCAAGC
TGTTTACCAGCAAAGATCAATCGCTGCTGATCAGGAGGAATTCCTTCTTTATCTTGAATCTTTGCCTTCACGTTGTCGATTGTGTCAGAAGATTCGACTT
CGAGTGTGATGGTTTTGCCAGTTAGGGTTTTGACGAAGATTTGCATGCCGCCGCGGAGACGGAGAACGAGATGGAGCGTTGATTCTTTTTGGATGTTATA
ANNNNNNNNCGGCCGTCTTCGAGTTGTTTTCCGGCGAAGATGAGACGCTGTTGGTCTGGTGGAATTCCTTCCTTATCTTGGATTTTGGCTTTGACGTTGT
CGATGGTGTCGGAGGATTCAACCTCTAGGGTTATGGTTTTGCCGGTTAGGGTTTTCACGAAGATCTGCATGATGATGAATTTGGTTTGATTAACAAGAGA
AAGAAAGAAAAGAGAGATTTGATTTTGGAACTAGAGTTTGTATTT