CANTATAdb - search

Detailed information on CNT3017355

BLAST search results

BLAST vs Swiss-Prot:
sp|P31156|METK2_PETCR, E-value = 4e-61

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)

Target	Query species	Target species	Query coverage (%)	Target coverage (%)	Identity	Alignment length (nt)	Orientation
CNT30672906	Zea mays	Setaria viridis	58.3	37.21	87.93	323	forward
CNT30349160	Zea mays	Eragrostis tef	46.93	28.05	86.15	260	forward
CNT3055147	Zea mays	Amborella trichopoda	24.91	14.26	82.61	138	forward
CNT30101810	Zea mays	Oryza rufipogon	58.3	12.74	85.45	323	forward

Expression of CNT3017355

Peptides detected in this lncRNA

>peptide 1 (51 aa)
MIERRHTRPDQTRPKASSKTEEAPHAEDGFSALRGFTTSQVKSGSSLPKCP*

>peptide 2 (42 aa)
MMIMPGLKSKFSFTIFRISLSGIAPVPYVSTNTERGSGTPMA*

Sequence

>CNT3017355
CAAAACCAGAAATAATCCTCTAGTAGGTGAATAAGCAGACACAATACGACCCCGCACACGTACCACTTATTAGGACAGTGACAGTACAGTACAAATGATA
AGCAAGGGGCAGATCAAGAATCACAAGTAGGAGCCATAAAAAAGCATGATAGAGCGCAGGCACACCAGACCAGACCAGACCAGACCAAAAGCTTCTTCCA
AAACAGAGGAGGCGCCTCATGCAGAAGACGGCTTCTCCGCCTTGAGGGGCTTCACCACCTCCCAGGTGAAGTCGGGGTCGTCCCTCCCAAAGTGCCCGTA
GGCCGCCGTCTTGAGGTAGCGCCCGTTGATGATGATCATGCCGGGCCTGAAGTCGAAGTTCTCCTTCACGATCTTCAGGATCTCCTTGTCGGGGATCGCG
CCGGTGCCGTACGTGTCCACGAACACCGAAAGGGGCTCGGGCACGCCGATGGCGTAGGAGACCTGGACAATGGCGCGGCGGGCGAGGCCGGCGGCGACGA
TGCTCTTGGCAGCCTGCCTCGCGACGTAGGCCCCGCTGCGGTCCACCTTGGTCG