CANTATAdb - search

Detailed information on CNT3017337

BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)

Target	Query species	Target species	Query coverage (%)	Target coverage (%)	Identity	Alignment length (nt)	Orientation
CNT30576588	Zea mays	Oryza barthii	22.81	29.61	99.23	130	reverse complement

Expression of CNT3017337

Peptides detected in this lncRNA

>peptide 1 (31 aa)
MGESLTEQCRVEVEGLRVVNFFSRRRNNDGI*

>peptide 2 (36 aa)
MISSWSERMISHTGIETRPRLLREAAVGNFPQWAKA*

Sequence

>CNT3017337
CAAAATTTTATTAGCAATTACTAAGTATAAGTAAATACCAACCCAATTAAGATGAGGAGCAAAAGGAGAAATCCGCCCAAGGAGGGGCTCGCGTCTGATT
AGCTAGTTGTTGAGGCAATAGCATACCAAGGCGATGATCAGTAGCTGGTCCGAGAGGATGATCAGCCACACTGGGATTGAGACACGGCCCAGACTCCTAC
GGGAGGCAGCAGTGGGGAATTTTCCGCAATGGGCGAAAGCCTGACGGAGCAATGCCGCGTGGAGGTGGAAGGCCTACGGGTCGTCAACTTCTTTTCTCGG
AGAAGAAACAATGACGGTATCTGAGGAATAAGCATCGGCTAACTCTGTGCCAGCAGCCGCGGTAAGACAGAGGATGCAAGCGTTATCCGGAATGATTGGG
CGTAAAGCGTCTGTAGGTGGCTTTTCAAGTCCGCCGTCAAATCCCAGGGCTCAACCCTGAACAGGTGGTGGAAACTACCAAGCTGGAGTACGGTAGGGGC
AGAGGGAATTTCCGGTGGAGCGGTGAAATGCATTGAGATCGGAAAGAACACCAACGGCGAAAGCACTCTC