« Back to Trifolium pratense search


Detailed information on CNT30173305


BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30201897Trifolium pratensePisum sativum8.3420.5791.8686forward

Expression of CNT30173305

Peptides detected in this lncRNA

>peptide 1 (43 aa)
DTIINIRKTHNCLNPYSLFVLHRGRAVLRYSVSTTKVHRTFRL*

>peptide 2 (31 aa)
MQVCRKMSRSLQRFPQDIIIDSCLTMLHCPL*

Sequence

>CNT30173305
TGACACCATAATCAATATTCGCAAAACCCATAATTGCTTAAACCCTTATTCTCTATTCGTTCTCCACCGCGGCCGAGCCGTGTTGCGATACAGTGTAAGC
ACGACGAAGGTTCATCGAACTTTTCGATTATGAGCGTCGTTTATCTCAGATTAAAATTATTTTCGGTAAAATCCCAAAATCGTTGAATCAGAGCAAAATC
ACGCCGGAGAAAAATTGGAGCTAAATTACGCTGGATAGAAATCGGAGCATGTTGAATTTACACCGGAGTGAATTACGATGAATCACCACACAATTTTCGT
TTCCACTTTGTTCTCTTCTTCTTCGGTTCTTTGGAACTGAATGACGCTGAAGATTTCATCACTGTTTCTACTTCTCGATATTCCTACATAATTGCCAAAC
ATGCAAGTTTGTCGTAAGATGTCACGATCACTACAAAGATTTCCTCAAGATATAATCATTGATAGTTGCCTCACAATGCTGCATTGTCCGCTCTAGAATT
TTTTGATAGCGTTTGTGTGCTACAGGATTATTTTATAAGCTATGAAGTTTTGGACAAACTTATAAGCTATGAGGTTTGGCACATCTCTCATTCTCTTCAT
TCTCAAACATAGAAAATCCACACAAAGGTTCAAGTTATTGATATCCATCTAGTCTAAGAGTGTACAGGTTGATACAGAGACATATACTTGCAACTGTTTG
TTTTGGATAAATATGATACTTTCAGTTTGGTATCAAGTTAATGCACAATTAGGCTTCACAATGATTCACGTAAATGTGTTTAAATGTATTTAAATTAGGC
TTCATTTGAGGCTCAAGTCGGGTTTTGAAATTAGAAAAGCTTACTGTCAAGTTTTCAGTAATGAATTGAGGAACATAGATTCATTTTTGNNNNNNNNNNN
NGTGGAAGGGGAATATCCAAATACATGTCTTATTTTTTTTTTAATAATGCATATTTGTAGCAATGAAATACTATATCCTCCTCCCCAAAATGATTGATTA
CAAATAGCTATGATTCCTAATTCTCTATAAA