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Detailed information on CNT30173253


BLAST search results

BLAST vs Swiss-Prot:
sp|P10707|CB2D_SOLLC, E-value = 5e-49

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30315988Trifolium pratenseCorylus avellana33.2567.3884.45283forward
CNT30269346Trifolium pratenseChenopodium quinoa28.9131.5884.96246forward
CNT30380492Trifolium pratenseManihot esculenta29.7334.5684.58253forward
CNT30525465Trifolium pratensePhaseolus vulgaris33.0233.985.41281forward
CNT30200456Trifolium pratensePisum sativum26.9157.6886.9229forward
CNT30504486Trifolium pratenseNicotiana attenuata31.3752.9887.64267forward
CNT3046620Trifolium pratensePrunus dulcis25.535.2884.33217forward
CNT30359036Trifolium pratenseLactuca sativa58.446.6282.29497forward

Expression of CNT30173253

Peptides detected in this lncRNA

>peptide 1 (37 aa)
MGQSFHLGRVGRLPHQEVHQQYDNLDSPYSKDTLRMD*

>peptide 2 (60 aa)
DGNTKSKKTYLEQVIEKINVIKTDMLVEILEELITILLSFIRFDKGLIALHNHHIIIHIH*

Sequence

>CNT30173253
CAGATGGCAACACAAAAAGTAAGAAAACATATTTAGAACAAGTGATTGAAAAAATAAATGTAATTAAAACTGACATGCTAGTAGAGATTTTGGAAGAACT
AATTACAATACTTTTGAGTTTCATTAGATTTGATAAAGGCCTTATAGCTTTGCATAATCATCATATCATAATTCACATTCATTGAAGACAGACCTAAATG
CACCAAATATTTAACTAAACTAATTAACAATAAGAAATTCACAATCTCTGATATTCAACACATTTTTGGTGTAATTTTAGCTCACTTTCCTGGGGCAAAG
TTTGTGGCGAAGGCCCAAGCATTGTTGTTAACTGGGTCAGCAAGGTGGTCAGCAAGGTTCTCTATAGGTCCTTTTCCGGTTACAATAGCTTGAACAAAGA
ATCCAAACATTGAGAACATAGCTAATCTACCATTCTTTAACTCTTTTACCTTCAACTCTGCAAAGGCTTCTGGATCATCAGCAAGGCCTAATGGGTCAAA
GCTTCCACCTGGGTAGAGTGGGTCGACTACCTCACCAAGAGGTCCACCAGCAATACGATAACTTGGACAGCCCATATAGCAAGGATACTTTGCGCATGGA
CTAGGCTTGGGTTACCCAAGTAGTCAAGTCCACCTTCACTGAAGATTTGAGATCCTGCCTTGAACCAAACAGCCTCGCCGAATTTGACACCATTGCGAGC
CAAGAGCTCAGGGAAGACACATCCCAAGGCACCCAACATAGCCCATCTACTGTGGATGACCTCGAGTTCACGATTTTTCGAAAAGGTCTCTGGATCAGCT
GAAAGTCCGGCAGTGTCCCAACCATAGTCANNNNNNNNNNNNNNNNNNNNN