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Detailed information on CNT30173252


BLAST search results

BLAST vs Swiss-Prot:
sp|P12331|CB22_ORYSJ, E-value = 3e-87

BLAST vs NONCODE:
NONMTRT001605, E-value = 3e-138

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30404250Trifolium pratenseBeta vulgaris59.1743.0882.35442forward
CNT30562274Trifolium pratenseActinidia chinensis59.7152.2981.39446forward
CNT30359114Trifolium pratenseLactuca sativa50.8767.0283.68380forward
CNT30646148Trifolium pratenseCannabis sativa26.3748.2886.29197forward

Expression of CNT30173252

Peptides detected in this lncRNA

>peptide 1 (60 aa)
DGNTKSKKTYLEQVIEKINVIKTDMLVEILEELITILLSFIRFDKGLIALHNHHIIIHIH*

>peptide 2 (31 aa)
MGQSFHLGRVGRLPHQEVHQQYGNPQQHPLR*

Sequence

>CNT30173252
CAGATGGCAACACAAAAAGTAAGAAAACATATTTAGAACAAGTGATTGAAAAAATAAATGTAATTAAAACTGACATGCTAGTAGAGATTTTGGAAGAACT
AATTACAATACTTTTGAGTTTCATTAGATTTGATAAAGGCCTTATAGCTTTGCATAATCATCATATCATAATTCACATTCATTGAAGACAGACCTAAATG
CACCAAATATTTAACTAAACTAATTAACAATAAGAAATTCACAATCTCTGATATTCAACACATTTTTGGTGTAATTTTAGCTCACTTTCCTGGGGCAAAG
TTTGTGGCGAAGGCCCAAGCATTGTTGTTAACTGGGTCAGCAAGGTGGTCAGCAAGGCCTAATGGGTCAAAGCTTCCACCTGGGTAGAGTGGGTCGACTA
CCTCACCAAGAGGTCCACCAGCAATACGGTAACCCTCAACAGCACCCATTAAGATAACTTGGACAGCCCATATAGCAAGGATACTTTGCGCATGGACTAG
GCTTGGGTTACCCAAGTAGTCAAGTCCACCTTCACTGAAGATTTGAGATCCTGCCTTGAACCAAACAGCCTCGCCGAATTTGACACCATTGCGAGCCAAG
AGCTCAGGGAAGACACATCCCAAGGCACCCAACATAGCCCATCTACTGTGGATGACCTCGAGTTCACGATTTTTCGAAAAGGTCTCTGGATCAGCTGAAA
GTCCGGCAGTGTCCCAACCATAGTCANNNNNNNNNNNNNNNNNNNNN