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Detailed information on CNT30173249


BLAST search results

BLAST vs Swiss-Prot:
sp|P12331|CB22_ORYSJ, E-value = 3e-123

BLAST vs NONCODE:
NONMTRT001605, E-value = 0.0

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30404043Trifolium pratenseBeta vulgaris55.0647.3382.76522forward
CNT30628736Trifolium pratenseVigna unguiculata50.9565.2783.85483forward
CNT30562273Trifolium pratenseActinidia chinensis60.6558.0282.61575forward
CNT3078262Trifolium pratenseBrassica juncea49.5868.3180.85470forward
CNT30417081Trifolium pratensePapaver somniferum56.6553.9279.89537forward

Expression of CNT30173249

Peptides detected in this lncRNA

>peptide 1 (62 aa)
YLEPVLMKQSIHHVLLNYCHEIKNTIISNNYKQFTMLYSSHXXXXXLTFPGQSLWQRPKHCC*

>peptide 2 (31 aa)
MGRSSLRGRVGRQLLQEVRQQYGNPQQLPLR*

Sequence

>CNT30173249
TTTATTTAGAGCCTGTACTTATGAAACAATCAATTCATCATGTTCTTTTAAATTATTGCCATGAAATCAAGAATACAATAATAAGTAATAACTACAAGCA
ATTCACAATGTTATATTCAAGTCACTCNNNNNNNNNNNTGCTCACTTTCCCGGGGCAAAGTTTGTGGCAAAGGCCCAAGCATTGTTGTTGACAGGGTCAG
CAAGGTGGTCAGCAAGATTCTCTATAGGACCTTTTCCGGTTACAATAGCTTGAACGAAGAATCCAAACATAGAGAACATAGCTAACCTACCATTTTTGAG
TTCTTTCACCTTTAACTCTGCAAAAGCCTCGGGGTCTTCAGCGAGGCCCAATGGGTCGAAGCTCCCTCCGGGGAAGAGTGGGTCGACAACTTCTCCAAGA
GGTCCGCCAGCAATACGGTAACCCTCAACAGCTCCCATTAAGATAACTTGGACGGCCCAAATAGCAAGGATACTTTGTGCGTGGACTAGGCTTGGGTTAC
CCAAGTAGTCAAGTCCACCTTCACTGAAGATTTGAGATCCTGCCTTGAACCAAACAGCCTCGCCGAATTTGACACCATTGCGAGCCAAGAGCTCAGGGAA
GACACATCCCAAGGCACCCAACATAGCCCATCTACTGTGGATGACCTCGAGTTCACGATTTTTCGAAAAGGTCTCTGGATCAGCTGAAAGTCCGGCAGTG
TCCCAACCATAGTCANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNCGGTCTGGACCGTACCATGGACTACCAGAAGAA
ACTTTCTTTGGGGTCGTTTTTCTCATTGTGATTCTTCCCACTCCAAAGTCCTGAGTGGATGGGGAAAGTTTGATGGCTTTCCCAACCAATGTTGAAGAAG
AGAGAGACATTGTTGAAGCGGCCATTGTAGCTAGTATTTTTAGTGCTT