Detailed information on CNT30173248


BLAST search results

BLAST vs Swiss-Prot:
sp|P12331|CB22_ORYSJ, E-value = 3e-125

BLAST vs NONCODE:
NONMTRT001605, E-value = 4e-146

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30514354Trifolium pratenseJuglans regia41.3451.1383.46272forward
CNT30269327Trifolium pratenseChenopodium quinoa66.5750.0684.02438forward
CNT30404176Trifolium pratenseBeta vulgaris63.0741.9285.3415forward
CNT3046345Trifolium pratensePrunus dulcis57.677.1979.95379forward
CNT30633669Trifolium pratenseCapsicum annuum65.3555.0684.88430forward
CNT3091616Trifolium pratenseSolanum tuberosum65.3534.2986.51430forward

Expression of CNT30173248

Peptides detected in this lncRNA

>peptide 1 (47 aa)
ACGHSHSFESLNISTNMKEIYIVIIKFVTSHCCGEILTHFPGAKFVA*

>peptide 2 (31 aa)
MGQSFHLGRVGRLPHQEVHQQYGNPQQHPLR*

Sequence

>CNT30173248
GTGCATGTGGTCATTCACATTCATTTGAGTCTCTTAATATTAGTACAAACATGAAAGAAATTTACATTGTGATAATCAAGTTTGTCACTTCCCATTGTTG
TGGAGAAATTTTGACTCACTTTCCTGGGGCAAAGTTTGTGGCATAAGCCCATGCGTTGTTGTTAACTGGGTCAGAAAGGTGGTCAGCAAGGTTCTCTATA
GGTCCTTTTCCGGTTACAATAGCTAATCTACCATTCTTTAACTCTTTTACCTTCAACTCTGCAAAGGCTTCTGGATCATCAGCAAGGCCTAATGGGTCAA
AGCTTCCACCTGGGTAGAGTGGGTCGACTACCTCACCAAGAGGTCCACCAGCAATACGGTAACCCTCAACAGCACCCATTAAGATAACTTGGACAGCCCA
TATAGCAAGGATACTTTGCGCATGGACTAGGCTTGGGTTACCCAAGTAGTCAAGTCCACCTTCACTGAAGATTTGAGATCCTGCCTTGAACCAAACAGCC
TCGCCGAATTTGACACCATTGCGAGCCAAGAGCTCAGGGAAGACACATCCCAAGGCACCCAACATAGCCCATCTACTGTGGATGACCTCGAGTTCACGAT
TTTTCGAAAAGGTCTCTGGATCAGCTGAAAGTCCGGCAGTGTCCCAACCATAGTCANN