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Detailed information on CNT301731


BLAST search results

BLAST vs Swiss-Prot:
sp|P38559|GLNA1_MAIZE, E-value = 1e-61

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30691310Zea maysOryza sativa14.5128.5792.8684forward
CNT30671311Zea maysSetaria viridis21.0742.9686.07122forward
CNT30296689Zea maysTriticum aestivum30.7433.7891.57178forward
CNT30392802Zea maysTriticum turgidum20.2116.0788.89117forward
CNT30250445Zea maysAvena sativa30.7432.690.45178forward
CNT30137282Zea maysLolium perenne16.2321.9193.6294forward
CNT30684315Zea maysTriticum urartu17.2735.0993100forward
CNT30351207Zea maysEragrostis tef30.7427.390.45178forward
CNT30364720Zea maysSorghum bicolor30.0527.4487.36174forward
CNT30115740Zea maysOryza nivara14.5122.1192.8684forward

Expression of CNT301731

Peptides detected in this lncRNA

>peptide 1 (53 aa)
TILRPIDHYIFFIYPINWKHSQTYIYDASKNKKTSQSLFIVPEQYTGDRSDKF*

>peptide 2 (60 aa)
MTQAKTKKHRSRYSLFPSNTPETVVINFRTTESKFQNQSDTTADALCRRKTVGSLENAHA*

>peptide 3 (49 aa)
MSAVSWRPVRRRSLPSPYAAMCSLCLFPSLSIAALITSYPPASLIDLVL*

>peptide 4 (35 aa)
MRCAEEKQWAPSRMHMLDQFPFHRMVVSAIMPVTT*

Sequence

>CNT301731
ACTATTTTGAGACCGATAGACCATTACATTTTTTTCATTTACCCAATAAACTGGAAGCACAGCCAAACGTACATCTATGACGCAAGCAAAAACAAAAAAA
CATCGCAGTCGTTATTCATTGTTCCCGAGCAATACACCGGAGACCGTAGTGATAAATTTTAGGACAACGGAATCTAAATTTCAAAACCAAAGCGACACCA
CGGCGGATGCGTTGTGCAGAAGAAAAACAGTGGGCTCCCTCGAGAATGCACATGCTTGATCAGTTTCCATTCCACAGGATGGTGGTCTCGGCGATCATGC
CGGTGACGACGTAGGGGTCCATGTTGGACGCCGGCCTGCGGTCCTCGAAGTAGCCCTTGCCCTCCCTCTCGGTGTTGATGTCGGCGGTCTCGTGGCGGCC
CGTGAGGCGGCGCTCGTTGCCCTCGCCGTACGCGGCGATGTGCTCCTTGTGCCTCTTCCCCAGCTTGTCGATCGCCGCCTTGATCACCTCGTATCCCCCG
GCCTCCCTCATCGACTTGGTGCTGTAGTTGGTGTGGGCGCCGGCGCCGACGATTCCGGCCATCTCGGTGATCCTCTGGA