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Detailed information on CNT30172962


BLAST search results

BLAST vs Swiss-Prot:
sp|Q41657|MT2_VICFA, E-value = 2e-09

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT3073023Trifolium pratenseQuercus suber5.2725.4789.7168reverse complement
CNT3036674Trifolium pratenseCucumis melo4.9623.3689.0664forward

Expression of CNT30172962

Peptides detected in this lncRNA

>peptide 1 (66 aa)
MQFNKKGTKKPNQIKKNIFPEEEKKYIFLENKKNQMLQYKKSQITISLTHTRKKKSFLHKYFFLNI*

>peptide 2 (79 aa)
MNENLIFNQKSLLQKKNHXXXXXXXXXXXXXXKISPSTAIAALAATSTSTVSTTARHFQMMRSKNKHNKRFLRHKQKLTQ

>peptide 3 (53 aa)
MYGDKKNVFLLKNSISGVPLKLIKIRFIFFLLEIKLKGYPINNFFFYGCSPLI*

Sequence

>CNT30172962
AGAGTACACATTAAAACATAATACATAACTTAAACTAGTTATATATAATAATAATTATTGGGTCATTTTCCATTTCATTTGCAAGTGCATGGGTTGCAGC
TCCCTCAAATTGGGTCTTAGCAGATCCAACTCCCATCACAAGGGTCTCAGTGGTGCTTGATTCTGTGTAGCTCATGTCAGGGTACATCTTGCAGCTGCAT
CACATTCAAAAATCAAATCATTTTTTAGTTAAATTGACACAAATAAAAAATTAGCAAAATTTGTGAAATTGAAAAAAGCCTTAAAAGTAATGTATGGTGA
CAAAAAGAACGTTTTTTTACTTAAAAATTCAATTAGTGGGGTACCCCTAAAATTAATCAAAATTAGATTTATTTTTTTTCTGCTTGAAATTAAACTAAAA
GGTTACCCAATAAATAATTTTTTTTTTTATGGTTGTTCTCCGCTAATTTAAATTGATCAGAATCCCCATATCTTTCGGTAATGCAAATTAATTTGTTCTT
TTAAATTGATATGAATTACCGTATCTCTCGATAATGCAAATTAATCTTATCGGAAGATATCTTTTGACAGTGTTTTTAGTGTGAAAAATTCAGGGGCGTA
GAGCAACCATAAAAAATTTCTTCAAATTCAACTATAGGCTACCTCAAAAATTAATCAAAAACCCATAAAACAATTTATACCAAAAATACAAAAACCTCCT
AAAACAAAGGATATGTGATCACAAAATTTTTCCAAGACAAGAGAAAAGTTAAAACATTTTTTTTCATGCAATTCAACAAAAAGGGCACTAAAAAACCAAA
TCAAATTAAGAAGAATATTTTCCCAGAAGAAGAAAAAAAGTATATTTTTCTCGAAAATAAAAAAAATCAGATGCTTCAATACAAAAAAAGTCAGATCACA
ATCTCACTCACTCACACAAGAAAAAAAAAATCATTTCTACACAAATATTTTTTTCTAAATATTTAGTGGCGTAACTTATTATCTGTCCAATTATTTTTCG
TTCATGCATAATTATTTTAAATATTTAATAAAAAATCAAAAAAATAAAGAATGAATGAAAATCTAATATTTAATCAAAAATCACTCCTTCAAAAAAAAAA
TCACAANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTGAAAATCTCACCCTCCACAGCCATTGCCGCACTTGCAGCTACTTCCACATCCACA
GTTTCCACCACAGCAAGACATTTTCAAATGATGAGATCAAAAAACAAACACAACAAAAGATTTTTAAGACACAAACAAAAACTAACACAAA