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Detailed information on CNT30172770


BLAST search results

BLAST vs Swiss-Prot:
sp|Q9MUS9|ATPI_MESVI, E-value = 7e-45

BLAST vs NONCODE:
NONATHT002192, E-value = 3e-54

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30696665Trifolium pratenseOryza sativa86.867.8385.78443forward
CNT30317837Trifolium pratenseCorylus avellana48.6323.5787.5248forward
CNT30703171Trifolium pratenseQuercus lobata86.673.7188.01442forward
CNT30617713Trifolium pratenseSesamum indicum53.7313.9885.77274forward
CNT3021394Trifolium pratenseCitrullus lanatus97.0678.9588.69495forward
CNT30198301Trifolium pratensePisum sativum97.2523.8693.75496forward
CNT30505351Trifolium pratenseNicotiana attenuata87.0612.7787.16444forward
CNT30291829Trifolium pratenseTriticum aestivum87.0611.2685.14444forward
CNT30226738Trifolium pratenseHordeum vulgare45.4917.7987.93232forward
CNT30541450Trifolium pratenseBrassica napus85.2915.4785.29435forward
CNT30238613Trifolium pratenseBrassica oleracea26.4726.0185.19135forward
CNT30511101Trifolium pratenseSolanum lycopersicum87.2536.4582.7445forward
CNT3017990Trifolium pratenseZea mays86.8613.3985.33443forward
CNT30232563Trifolium pratenseAnanas comosus87.2512.9987.42445forward
CNT30626489Trifolium pratenseDaucus carota21.3712.4393.58109forward
CNT3057337Trifolium pratenseAmborella trichopoda49.616.7984.19253forward
CNT30726491Trifolium pratenseLupinus angustifolius96.0842.0691.84490forward

Expression of CNT30172770

Peptides detected in this lncRNA

>peptide 1 (32 aa)
MLICKSIGVGWMYLPKYANPFFELTHRNRLLT*

Sequence

>CNT30172770
ATAATAGGTATAGGAACTACTAAAGGTACTAACGAAACAAGAACAACAACTACTAATTCATCAGCTAATATATTTCCGAAAAGTTGAAAACTAAGCGATA
AGGATTTTGTGAAATCTTCTAAGATGTTAATCTGTAAAAGTATTGGAGTTGGTTGGATGTATTTACCAAAATACGCCAATCCTTTTTTTGAACTAACCCA
TAGAAATAGGCTACTGACGTAAGTAAATCTAATGCAACATTAGTATTTATATCATTTGTGGGTGCAGCTAACTCTCCATGAGGTAATTTTATAATTTTCT
AAGGCAAAAGAGCCCCCGACCAATTCGAAACAAAAATAAATAGAAATAGAGTTCCAATAAACGGAACCCACAAACCATATTCTTCTCCAATCTGATTTTT
GCTCACGTCTCGAATAAATTCAAGGACATATTCAAAGAAATTCTGACCGGACGTGGGAATAGTGTGTGGATTTCTAACAACTAGAATGGTTGAAANNNNN
NNNNNNNNNA