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Detailed information on CNT30172703


BLAST search results

BLAST vs Swiss-Prot:
sp|P31853|ATPF2_SPIOL, E-value = 4e-43

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30512572Trifolium pratenseJuglans regia35.7823.2179.46185forward
CNT30198733Trifolium pratensePisum sativum15.2836.4186.0879forward

Expression of CNT30172703

Peptides detected in this lncRNA

>peptide 1 (36 aa)
MGFEEAMIIVAIVKVGFFWRILRISPSLFVCVLVQW*

>peptide 2 (44 aa)
LEFPSSSDSKPPLFPHAPLLKQHLLVPPTASPPPTYPSRCSIFL*

>peptide 3 (61 aa)
MRKRNSTTMIGRVRLKSKSAAFSNAKEGGANAKESEVVARVRDLSFESWSLSLGVMEGNLW*

Sequence

>CNT30172703
CTTGAGTTTCCTTCTTCATCTGATTCAAAGCCACCGCTATTTCCGCACGCGCCGCTCTTAAAACAGCATTTGCTTGTTCCTCCAACTGCTTCACCTCCTC
CGACGTATCCTTCACGCTGTTCAATTTTCCTCTGATGTTAGCGTCCCTTTCATCCATGAAATTTCCGAGAGGTGTGAAGTAAAGTTTGTCAAGAGCGACC
ATGAGGAAAAGAAACTCGACGACTATGATTGGGAGAGTGAGATTGAAATCGAAGAGTGCTGCTTTTTCGAATGCGAAGGAAGGTGGTGCGAATGCTAAGG
AGAGTGAAGTTGTTGCTAGGGTTAGGGATTTGAGTTTTGAGAGTTGGAGTTTGAGTTTGGGGGTAATGGAAGGGAATTTGTGGTGACTCGAATTATGGGT
TTTGAAGAAGCCATGATCATTGTGGCCATTGTGAAGGTTGGTTTTTTTTGGAGGATTTTGAGGATCTCTCCCTCTCTCTTTGTGTGTGTTTTGGTTCAGT
GGTGAGTGTGGTGATTG