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Detailed information on CNT30172567


BLAST search results

BLAST vs Swiss-Prot:
sp|Q76H85|H4_SILLA, E-value = 2e-51

BLAST vs NONCODE:
NONGMAT000508, E-value = 7e-34

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30318271Trifolium pratenseCorylus avellana45.1631.0582.47308forward
CNT30546681Trifolium pratenseIpomoea triloba44.8765.1181.05306forward
CNT30703567Trifolium pratenseQuercus lobata43.458.6182.09296forward
CNT30712284Trifolium pratenseGlycine max39.8857.8785.66272forward
CNT3059678Trifolium pratenseArabidopsis lyrata25.2235.7684.88172forward
CNT3082467Trifolium pratenseBrassica juncea27.8626.584.21190forward
CNT30211318Trifolium pratenseHelianthus annuus45.679.9582.64311forward
CNT30619612Trifolium pratenseCajanus cajan31.5251.3185.12215forward
CNT30360323Trifolium pratenseLactuca sativa35.4869.1484.3242forward
CNT30645276Trifolium pratenseCannabis sativa46.4858.780.13317forward
CNT3024855Trifolium pratensePopulus trichocarpa43.750.7781.88298forward
CNT3050826Trifolium pratenseCucumis sativus21.9943.9988150forward

Expression of CNT30172567

Peptides detected in this lncRNA

>peptide 1 (45 aa)
MPWMLSRRTFLCLFAPPFPNPLPPFPRPDIFVAVKKMDFSYNYEL*

>peptide 2 (42 aa)
EDLNHVITSQKIEIKNKNARFRCNCSKRVFNIHSSIRSNSKY*

Sequence

>CNT30172567
GAAGATCTTAATCATGTTATAACTTCACAAAAAATAGAAATTAAAAACAAAAACGCGCGTTTCAGATGTAATTGCAGCAAAAGAGTATTCAATATTCATT
CATCAATAAGATCCAATTCCAAATACTAGTAACACAGAACTAATCGATTCATTTCAATTCAATCAGATCTAAAGACTAATCTAATCAAAGATTCAAAAGA
ACCGAATCAAGAGCATAATAGAAATACAACAAAATCAACAAACATTTACAACTAAATCAAGCTAGTTCAATCAGAAACCCTAAATTGAACCCTAAAATCA
ACCACCGAAACCGTAAAGAGTCCTTCCCTGCCTCTTCAAAGCATAAACGACATCCATGGCAGTAACGGTTTTCCTCCTAGCGTGCTCAGTGTAGGTAACA
GCATCACGAATCACGTTCTCGAGAAAGATCTTGAGAACACCACGAGTTTCTTCATAGATCAAACCACTGATTCTCTTGACACCACCTCTTCTGGCTAAAC
GACGAATTGCAGGTTTTGTTATGCCCTGGATGTTATCACGAAGAACCTTCCTGTGTCTCTTTGCACCTCCCTTTCCCAATCCCTTACCTCCTTTTCCGCG
ACCTGACATTTTTGTTGCAGTGAAGAAAATGGATTTTTCTTATAATTATGAACTTTGAAGATTAGAAGAAGATTGGTTTTGG