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Detailed information on CNT30172489


BLAST search results

BLAST vs Swiss-Prot:
sp|Q39654|PSAL_CUCSA, E-value = 4e-54

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30516757Trifolium pratenseJuglans regia8.5322.2286.36110forward
CNT30376279Trifolium pratenseArabidopsis thaliana15.934.482.44205forward
CNT30629841Trifolium pratenseVigna unguiculata9.1520.1784.75118forward
CNT30507460Trifolium pratenseNicotiana attenuata8.4635.9785.32109forward
CNT30710020Trifolium pratenseGlycine max1850.5484.05232forward
CNT3042792Trifolium pratensePrunus dulcis10.0134.9683.72129forward
CNT30635301Trifolium pratenseCapsicum annuum16.1452.3980.77208forward
CNT3094368Trifolium pratenseSolanum tuberosum8.341.3187.85107forward
CNT30564215Trifolium pratenseActinidia chinensis7.7637.8884100forward
CNT3075006Trifolium pratenseBrassica juncea7.621.7886.7398forward
CNT30614377Trifolium pratenseArabis alpina7.9139.3886.27102forward
CNT30610860Trifolium pratenseGossypium raimondii5.2823.0586.7668forward
CNT30360483Trifolium pratenseLactuca sativa7.2121.2387.193forward
CNT30154501Trifolium pratensePrunus persica7.9132.6985.29102forward
CNT30644515Trifolium pratenseCannabis sativa9.8521.9782.68127forward
CNT3031830Trifolium pratenseTheobroma cacao7.626.8588.7898forward
CNT3037642Trifolium pratenseCucumis melo8.0739.2587.5104forward
CNT30726870Trifolium pratenseLupinus angustifolius16.8321.5185.71217forward
CNT3049140Trifolium pratenseCucumis sativus12.9652.3580.24167forward

Expression of CNT30172489

Peptides detected in this lncRNA

>peptide 1 (30 aa)
VFTAKTPFPSIVHSSIILIKDGKQILSENK*

>peptide 2 (32 aa)
MRRSQFYKSYYTKMMIFFYYNFFFKSKLNINK*

Sequence

>CNT30172489
CGTTTTTACTGCAAAGACTCCATTTCCATCAATTGTACATAGTTCAATAATTCTAATAAAAGACGGAAAACAAATATTATCAGAAAACAAATGAAAAACA
TAAGAGAGTATTTAACTTAACATTGTAGTAACAAAATGAGATTCATAAAATACAACATGTACATCCATCATCTCATTAGCACACAAAAGCATTAGAAATT
AAGAGAGTAATTATTTTTTTTTTACTTGACAAAGTATGGAAGATCCAAAACATAAAGAAGGAAGTAAGCCCAAGTAACACCAGAAATGCCTCCAAAGAAA
AACCCACCAGTGAACTTGGCCCAACCATCAGCTGTTTGAAGCGGATCGGGCTGCTTCTTACGGCCCGTTAAGGTCAATGATGGTGCGGTCGATGGATCGC
CTTCGTTGAAGGAAGAAATCCCGTAGATTGTTAGGGTAAGGCTAAGGATAACAACAAGCCCGGCAGCTGGTAGGTTGGAGAGGTACCATGCCACCAATGG
GCTTGATGTGACTGGAGTTTCAAGGCTTCCAATGAATGGGTCACCGTTGATTGGTTGAATCACTTGGTATGTGGGCTGCAACAATGGAATTTGCCAATTT
AACAACAAAACATCAACGTTAAAATACATTTTTAGTCCCTTATTAACTTTTGAAAAGTTTTAATTTATATTTTATTTGAGTTTAATAGATATGTGTTTAC
GTCCAGCTATTTTTCCACATCACACCATTAAATTAAAATAAAGTGTAGTGAGATGATTTTATGAAATATACATGTGTTATTGAATGGCAGTGTACGTAAA
AGTTGAACGAATCTACTCCCCGTTTAAGTTGTAAAATGGGGGACCTGAATTGGGTGCAGTCAGCACCCTTGATTGCATGCGCAGGTCTCAATTTTATAAA
AGTTATTATACCAAGATGATGATTTTTTTCTATTACAATTTTTTTTTTAAATCTAAACTAAATATAAATAAATGACACAATTGAACATTTTAAGAGTTAT
ATGACTAAAAAAAACTAACAAAATTAAGATAAGGGGTCAGAATTTTATCTTAACCAATCATAATAATGGCTTCTTATTGAATGTTAATGATAAGATTCCT
TAAATTAAACAAAACAATGTGTTCCTCTGCATAATGGTGCGTAATATGTTTTATATCCTATTCAATTATAGAAATTAACTAATGCTAATAAAAATTCAAT
AGTCTAGTTTACTAATGTAATAGGTGCCAAGTGATGAACATATTATATATATTTTCACAACATATTTATCATTAAATAATGAACATATT