« Back to Trifolium pratense search


Detailed information on CNT30172408


BLAST search results

BLAST vs Swiss-Prot:
sp|Q39172|AER_ARATH, E-value = 2e-59

BLAST vs NONCODE:
NONTPRT004232, E-value = 0.0

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30631797Trifolium pratenseVigna unguiculata62.5969.0982.58333forward

Expression of CNT30172408

Peptides detected in this lncRNA

>peptide 1 (37 aa)
MDFHIQQYSIKCLASNILKVNVNAFWKIPDLHKWIYIH

>peptide 2 (46 aa)
MMSLKQIIIINRVEEEVSKGTNIKQKHLHSFTHEQQKPLVYQHCDH*

Sequence

>CNT30172408
AGGGGACCAAAATACATTTAAGCATATCATAAAATGATGTCACTGAAGCAGATAATCATAATCAATAGAGTGGAGGAAGAGGTTTCCAAAGGCACCAACA
TTAAACAAAAGCATCTGCATTCATTCACTCATGAGCAACAAAAACCACTTGTTTACCAACATTGTGACCACTAAAGAGACCAACTAATGCTTTAGGGCCA
TTCTCTAGTCCCTTAGCTATGTCTTCTACATACACAATCTTTCCTTCTCTTATTAGAGGCAGAATAAACTCCAAGAATTTTGTATAAAAGTGATAGTAAT
CCGGTGCAATAAAACCTTGCATCTGAATCCGCTTATATATGATATGTGCCAAATTTGTTATACCTTCGGGTTGAGTAAGATTATACTGTGAAATCATTCC
GCAGACAGGTATGCGACCATGGACTTTCATATTCAACAGTACAGCATCAAGTGTCTTGCCTCCAACATTCTCAAAGTAAATGTCAATGCCTTCTGGAAAA
TACCTGATTTACATAAATGGATATATATCCAC