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Detailed information on CNT30172345


BLAST search results

BLAST vs Swiss-Prot:
sp|Q39172|AER_ARATH, E-value = 5e-60

BLAST vs NONCODE:
NONTPRT004230, E-value = 0.0

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT3087529Trifolium pratenseVigna radiata51.3171.8184.14372forward
CNT30147135Trifolium pratenseMedicago truncatula46.2185.2490.45335forward
CNT3026596Trifolium pratensePopulus trichocarpa13.122.8483.1695forward

Expression of CNT30172345

Peptides detected in this lncRNA

>peptide 1 (34 aa)
MIYHYVFIYRQILVQNKSGGRRIQRPYKECFIHK*

>peptide 2 (92 aa)
MHSYSLMSNNNHLFTNIATIIQANQCSRTILKTLSYVFHIHNLSFSYKRQDKFQEFCIKVIVINYDKTLHMNPFIYEMRQIRDTFMLSKIIL*

>peptide 3 (29 aa)
MDFHIQQYSIKCLASNILKVNVNAFWKIPD

>peptide 4 (29 aa)
MDEDELGGEPSIGMSHLTPLRRHHIFTTA*

Sequence

>CNT30172345
TATGGATGAAGATGAACTTGGGGGAGAACCAAGTATTGGAATGAGTCACTTGACTCCATTACGTCGACACCATATCTTCACAACTGCCTAGATCTGCTAT
GGTGGTGACTCATCCCTCGTAAGTAAAATCCAAATTACCTTGATAGATTAATCTCTACAATTAGACGCAGAAATATCATGATTTACCATTATGTGTTTAT
TTATCGTCAAATTCTAGTCCAGAACAAAAGTGGAGGAAGAAGAATACAAAGGCCATACAAAGAGTGCTTCATACACAAGTAACTCAACACAAAAAGCATG
AAAAAAGGCACCAGCATTTAGAAAAGCATATGCATTCATATTCACTCATGAGCAACAACAACCACTTGTTTACCAACATTGCGACCATTATACAAGCCAA
TCAATGCAGCAGGACCATTCTCAAGACCCTCAGCTATGTCTTCCACATACACAACCTTTCCTTCTCTTATAAGAGGCAAGACAAATTCCAAGAATTTTGT
ATAAAGGTGATAGTAATCAACTACGACAAAACCTTGCATATGAATCCGTTTATATATGAGATGCGCCAAATTCGTGACACCTTCATGTTGAGTAAGATTA
TACTGTGAAATCATTCCGCAGACAGGTATGCGACCATGGACTTTCATATTCAACAGTACAGCATCAAGTGTCTTGCCTCCAACATTCTCAAAGTAAATGT
CAATGCCTTCTGGAAAATACCTGAT