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Detailed information on CNT30172216


BLAST search results

BLAST vs Swiss-Prot:
sp|P69325|UBIQP_SOYBN, E-value = 0.0

BLAST vs NONCODE:
NONTPRT002153, E-value = 0.0

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30532219Trifolium pratenseEucalyptus grandis51.8852.5682.13884forward
CNT30316435Trifolium pratenseCorylus avellana44.2598.4383.42754forward
CNT30512897Trifolium pratenseJuglans regia49.7785.9281.6848forward
CNT30701438Trifolium pratenseQuercus lobata53.5262.5181.91912forward
CNT3019984Trifolium pratenseCitrullus lanatus52.759.283.85898forward
CNT30727322Trifolium pratenseCorchorus capsularis53.5871.8384.01913forward
CNT30379426Trifolium pratenseManihot esculenta52.2376.8683.03890forward
CNT30629220Trifolium pratenseVigna unguiculata53.878583.55918forward
CNT30200107Trifolium pratensePisum sativum49.8295.8288.69849forward
CNT30709517Trifolium pratenseGlycine max49.8291.3986.57849forward
CNT30635990Trifolium pratenseCapsicum annuum53.9944.3884.02920forward
CNT3086267Trifolium pratenseVigna radiata54.1748.287.54923forward
CNT30511508Trifolium pratenseSolanum lycopersicum52.8868.8881.8901forward
CNT30147063Trifolium pratenseMedicago truncatula53.9383.791.95919forward
CNT30609156Trifolium pratenseGossypium raimondii52.5269.2782.01895forward
CNT30624310Trifolium pratenseDaucus carota52.4138.2183.54893forward
CNT30423866Trifolium pratensePapaver somniferum52.0569.3582.64887forward
CNT30642981Trifolium pratenseCannabis sativa53.481.1182.53910forward
CNT3032244Trifolium pratenseTheobroma cacao53.5879.4682.26913forward
CNT3021694Trifolium pratensePopulus trichocarpa39.6769.7684.76676forward
CNT30330420Trifolium pratenseDioscorea rotundata53.5853.9681.49913forward
CNT30724005Trifolium pratenseLupinus angustifolius53.5270.6488.38912forward

Expression of CNT30172216

Peptides detected in this lncRNA

>peptide 1 (44 aa)
MPSLSCILAFTLSIVSELSTSKVIVLPVRVFTKICIPPRRRKTR*

>peptide 2 (40 aa)
MVSELSTSRVIVFPVRVLTNICIPPRRRSTKWRVDSFWML*

>peptide 3 (48 aa)
MKGGFLLDVVIGQGSAIFELLSSKNQPLLIRGNALLVLYLSLHIVNCV*

>peptide 4 (37 aa)
MATTMYQSSILYYGYNKVKKTHEEKTHVKNQILPNNQ*

>peptide 5 (48 aa)
MEGRLLLDVVIGKGTPVLQLLSSKNQTLLVRWDPFLILNLGLNIVYGI*

>peptide 6 (63 aa)
MVSELSTSRVMVLPVRVLTKICIYIIQNKQKNKMYQSSILYYGYNNVSIINSLLWLQQSEKDS*

Sequence

>CNT30172216
GTGCATATCATTTGAACTTCGGATAAAAATATAAAGTAAGGAGTGCAAGATTACTAGAACAATAACAGATAAACCATGTTCATGAAGTAAACTGAGAACA
GAATTATACAAATACCACAGCAAACTAAAGTTTTAAGGGCCAATATGGACTAAAGACCCGTGCAATAACAAGTTCTGAAACAATAGAAACGTAAGACCTG
CAAGGACTTCCACACATTATAAGACAGCTCTGCAACATTCACATACTTAAAATCCACCACGAAGGCGCAACACAAGGTGAAGAGTAGACTCCTTCTGAAT
GTTGTAGTCAGCAAGGGTCCTTCCATCCTCCAATTGCTTGCCAGCAAAGATCAACCTCTGCTGATCTGGTGGGATTCCCTCCTTGTCTTGTATTTTTGCC
TTGACATTATCGATCGTATCTGAACTTTCTACCTCCAATGTAATGGTCTTTCCAGTCAAAGTCTTCACAAAGATCTGCATACCTCCCCTCAGACGAAGGA
CAAGATGAAGGGTGGATTCCTTCTGGATGTTGTAATCGGCCAAGGTTCGGCCATCTTCGAGCTGCTTTCCAGCAAAAATCAACCTTTGCTGATCCGGGGG
AATGCCCTCCTTGTCCTGTATCTTAGCCTTCACATTGTCAATTGTGTCTGAGCTCTCAACCTCCAAAGTTATTGTCTTACCAGTAAGAGTTTTCACAAAA
ATCTGCATACCACCACGAAGACGCAAGACAAGGTGAAGAGTGGATTCTTTCTGGATGTTGTAATCAGCTAAGGTCCGGCCATCTTCGAGCTGCTTTCCAG
CAAAAATCAACCTTTGCTGGTCTGGTGGGATTCCCTCTTTGTCTTGAATCTTGGCCTTGACATTGTCAATGGTATCAGAGCTCTCCACCTCAAGGGTGAT
TGTCTTTCCGGTGAGGGTCTTAACAAATATTTGCATACCACCACGGAGACGGAGCACCAAATGGAGGGTAGACTCCTTTTGGATGTTGTAATCGGCAAGG
GTACGCCCGTCCTCCAGCTGCTTTCCAGCAAAAATCAGACGCTGCTGGTCCGGTGGGATCCCTTCCTTATCTTGAATCTTGGCCTTAACATTGTCTATGG
TATCTGAACTCTCAACTTCCAGAGTGATGGTCTTGCCAGTGAGGGTCTTAACGAAGATTTGCATCTATATTATCCAAAATAAACAAAAAAATAAAATGTA
TCAATCATCAATTCTTTATTATGGCTACAACAATGTATCAATCATCAATTCTTTATTATGGCTACAACAAAGTGAAAAAGACTCATGAAGAAAAGACTCA
TGTTAAAAATCAAATTCTCCCAAACAATCAATAAATTGGATTATGAATTTACATTGTAATTAATCGTTCCGATCACAGAATCAAACAAATAAATATCCAT
GAACTAATCTAATTGAAATAAATTTTAGAATCATGCAATACACATAATTTTGACTAATTGAATTAATCGAGATAACTTTCACAAAGATCTTCGCATGAGA
AATTATTGAGACAGCAAAATCATGTAAACGGTTTGATTCAGAAAAAGAGAAAAACAAAGCCTGATCCAATGATCGATCGAAAAAATAAAAGATTAAACAA
AACCCTAATAATTGATGTCAAATAATCGAAATAAATTGAAGAATTCAGAAATCGATTGAACGAGAACTAATAATCGAATCCATAATCGGAGGAGAAGAGA
GAAT