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Detailed information on CNT30172135


BLAST search results

BLAST vs Swiss-Prot:
sp|Q8RWE8|GGAP1_ARATH, E-value = 1e-35

BLAST vs NONCODE:
NONTPRT003710, E-value = 0.0

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30711245Trifolium pratenseGlycine max18.4143.7786.71158forward
CNT30651855Trifolium pratenseRosa chinensis11.8928.3384.31102forward
CNT30726833Trifolium pratenseLupinus angustifolius11.3143.6990.7297forward

Expression of CNT30172135

Peptides detected in this lncRNA

>peptide 1 (47 aa)
MVNSCKSTEAVVTQSEIWISSFSCHVKSKQEANARKCAESAKHAHTQ*

>peptide 2 (55 aa)
MLPLKVLISNIRHNPANFYKHCTITEFVHLEPCCCYCRTTHSCEPATTVGYVVVL*

>peptide 3 (62 aa)
MLLFCREIQASETIFDKSSSVSPPSKTRPLTGYFNNLDIFTPPFDIAIFLVGAFSIGNGIAK*

Sequence

>CNT30172135
TTTTGAGCAATGAGATTTACATATATATAAAAATACCACGTTTATTTATTACAAATGTGGAACCAGAAATACATTATCTTTAACAACAAGGTGCAGTTTG
ATTAGCTAAGGAAACAGATACATGAAGTTGTTATTTTAGGCAAAGTGAAAGCCATGACAGAAAGTACAATACAGTTATACAAAACACAAACATTAAGCAC
AACATAAATCTAGAACAACTTAAGCAAATGTTACCATTGAAGGTACTTATTTCAAACATAAGACATAATCCAGCAAATTTTTATAAACACTGCACAATCA
CTGAATTTGTTCATTTAGAACCTTGTTGCTGTTACTGCAGAACAACACATTCTTGTGAACCAGCCACCACAGTAGGGTATGTTGTTGTTTTGTAGGGAGA
TACAAGCATCTGAAACAATTTTTGATAAATCTTCAAGTGTGTCGCCGCCCTCAAAGACAAGACCTCTAACCGGATACTTCAACAATTTAGATATCTTCAC
TCCACCATTTGACATTGCGATTTTCTTAGTGGGAGCCTTCTCAATAGGAAACGGCATAGCCAAATAATAAGCCTACATAAGAAACGAAATTATCAACAAA
GACTATTAAGGTAGTTGTAATCTCGAGATATTTAGGACTCGTTTGGTGATAAGGATAATAGAGACCAGATATGATAAGCAATCACTGTCCAATACCTGGA
AGTGAAGATGGTTAATAGTTGCAAAAGCACCGAGGCTGTTGTAACCCAATCGGAAATATGGATTAGCAGCTTCAGCTGCCATGTGAAGAGCAAGCAAGAG
GCAAACGCTCGAAAATGCGCGGAATCAGCAAAACATGCCCATACTCAATAGGACTGAC