« Back to Trifolium pratense search


Detailed information on CNT30171926


BLAST search results

BLAST vs Swiss-Prot:
sp|P27520|CB215_PEA, E-value = 2e-62

BLAST vs NONCODE:
NONSTUT002515, E-value = 3e-32

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30708305Trifolium pratenseGlycine max100.9155.0785.62445forward
CNT30538907Trifolium pratenseBrassica napus31.0731.6486.86137forward

Expression of CNT30171926

Peptides detected in this lncRNA

>peptide 1 (90 aa)
MENIANRPFLSSFTFNSANASGMDQVWVAQIVKATLREDLGTSLKPDCLAEFNTILFKDFREGTSQCSKHSPSAVNYFKLTVLCKSFRVS*

>peptide 2 (77 aa)
ICPCVVGDRVSKMVVKVLNRSLAGNNGLNKETKHGEHSQSAVLEFLHLQLCKCIRHGSSLGCPNSQGHPQRRSGHQP*

Sequence

>CNT30171926
CATATGCCCATGCGTTGTTGGCGACAGGGTCAGCAAGATGGTCGTAAAGGTTCTGAACAGGTCCCTTGCCGGTAACAATGGCTTGAACAAAGAAACCAAA
CATGGAGAACATAGCCAATCGGCCGTTCTTGAGTTCCTTCACCTTCAACTCTGCAAATGCATCAGGCATGGATCAAGTTTGGGTTGCCCAAATAGTCAAG
GCCACCCTCAGAGAAGATCTGGGCACCAGCCTTAAACCAGACTGCCTCGCCGAATTTAACACCATTCTTTTCAAGGATTTCAGGGAAGGTACATCCCAAT
GCTCCAAGCATAGCCCATCTGCTGTGAATTACTTCAAGCTCACGGTTCTTTGCAAAAGTTTCAGGGTCAGCTGATAAGCCAGCTGTGTCCCATCCGTAGT
CACCAGGGAATTCACCAGTCAGGTATGATGGAATTTGTTCT