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Detailed information on CNT30171906


BLAST search results

BLAST vs Swiss-Prot:
sp|P35100|CLPC_PEA, E-value = 2e-75

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30631438Trifolium pratenseVigna unguiculata47.8863.1489418forward
CNT30487971Trifolium pratenseOlea europaea35.6259.8181.67311forward
CNT30122306Trifolium pratensePhyscomitrium patens1133.3384.3896forward
CNT30254596Trifolium pratenseAvena sativa26.9217.7283.83235forward
CNT30658759Trifolium pratenseTriticum dicoccoides18.7927.781.1164forward
CNT30311914Trifolium pratenseCamelina sativa42.7360.3679.62373forward
CNT3062430Trifolium pratenseArabidopsis lyrata42.1531.9279.35368forward
CNT30717839Trifolium pratenseMalus domestica golden40.8970.2882.91357forward
CNT30625756Trifolium pratenseDaucus carota18.934.0287.27165forward
CNT3053264Trifolium pratenseAmborella trichopoda20.7328.9181.22181forward
CNT30150411Trifolium pratenseBrachypodium distachyon22.1138.2282.38193forward

Expression of CNT30171906

Peptides detected in this lncRNA

>peptide 1 (43 aa)
MSAISFTSNFVSCLKTIISSNLFKNSGLKYCFSSSVTKLLILL*

>peptide 2 (39 aa)
KFIKLLFTLLMRVEMSDKKSSLSLEVYVENQHLQCHSIN*

>peptide 3 (33 aa)
MTESPSLISLASIFSAMLSSKRRIMALLRGLAP*

>peptide 4 (31 aa)
MDEDERASNTQIVFIIPTPFLVTTLYRKGLW*

>peptide 5 (59 aa)
MSSNKYAIAILYNNVGMLHYIVYQRKHKKAFQLPMKQPWMKMNARPIHKLFSSFPHLFW*

Sequence

>CNT30171906
AAAAGTTTATTAAATTGCTATTTACTCTACTAATGAGGGTTGAGATGTCTGATAAAAAATCTTCCCTATCATTGGAAGTTTACGTGGAAAACCAACATCT
ACAGTGTCACTCCATAAACTAGGAATACAACCATGAGATGAACCTGAAAAACATGTAACCCCCCTTTACATTGGGTGACATATTTAAGATCTAAATTACC
CCTGTCATACAAGTATTTGTCATTACATGTCTAGCAATAAATACGCCATAGCAATACTATACAACAATGTTGGGATGTTACATTACATAGTCTATCAGAG
AAAGCATAAAAAGGCATTCCAGCTTCCGATGAAACAGCCATGGATGAAGATGAACGCGCGTCCAATACACAAATTGTTTTCATCATTCCCACACCTTTTT
TGGTAACCACATTATATAGGAAGGGCCTCTGGTAATGACTCCTGAGCACCGCTGGTACCGTTGAGAACAATCACATTACCGTCAGAATCAACATCCACTA
TGACAGAGTCTCCCTCCTTGATCTCTCTGGCGAGCATCTTCTCAGCCATGCTATCCTCCAAAAGACGCATTATGGCTCTTCTTAGAGGCCTAGCTCCGTA
ACTAGGATTATAACCTTCGTCAACCACCCTGTCCCTAAATCTTTCTGTTACTTGAAGTTCAATCTCTTTGATCTTCAGTCTCTCAAACACTTCCTTGAGC
ATTATGTCTGCTATTTCCTTCACCTCTAATTTTGTGAGTTGCCTGAAAACAATCATTTCATCCAACCTATTTAAAAACTCTGGCCTGAAGTATTGTTTTA
GCTCCTCAGTCACCAAACTCTTGATTCTATTATAACTGCTATCTTTCTCATCGTAATCCAGATCGAATCCAAA