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Detailed information on CNT30171605


BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE:
NONTPRT003215, E-value = 0.0

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30546130Trifolium pratenseIpomoea triloba8.7853.9284.55110forward
CNT30515355Trifolium pratenseJuglans regia12.3725.285.16155forward
CNT30405492Trifolium pratenseBeta vulgaris9.1848.3283.48115forward
CNT30629575Trifolium pratenseVigna unguiculata12.6138.5491.14158forward
CNT30236705Trifolium pratenseBrassica oleracea8.7823.3586.36110forward
CNT30609040Trifolium pratenseGossypium raimondii11.6531.7482.88146forward
CNT30359820Trifolium pratenseLactuca sativa7.0222.6886.3688forward
CNT30725395Trifolium pratenseLupinus angustifolius6.9422.9688.5187forward

Expression of CNT30171605

Peptides detected in this lncRNA

>peptide 1 (47 aa)
MELFRVFRVTQRIKSTTRVFLLLRVFLHTPLVLNKSNRKEFNDQNGR*

>peptide 2 (42 aa)
MTKMVGRLLVLQEVLPIPVLLPNFLILMPPVSKSLAAKYKCK*

>peptide 3 (37 aa)
ISIPKKPTKINYKDMENNTIDRYDSLQNNVFGGVLHK*

>peptide 4 (31 aa)
MSWLYTQKCYFNINLEQLNLGQFRNVMSQQV*

Sequence

>CNT30171605
TATTAGCATACCAAAAAAACCAACAAAGATTAATTACAAAGACATGGAAAACAACACCATAGATAGATATGATTCATTACAAAACAATGTATTTGGTGGA
GTTTTACACAAGTAGAACTGCTAATATATAGAGGTAGAAATCTATTGAGGGGGAATAAGAACATTTCCAATGTTGTTGTGCCATGGATCAGCCAAGTGAG
TAGCCAAATTCTCCAAAGGTCCAGTGCCTGGATAAGCTGATTGTTGAACACAGATTCCAACAAAAGCCAACAAAGCAAGACGTCCTAATAATACAAACAT
TCCACAAAGTCATTAGTAACACATTTGATCAATTTAGAACATGCAAATTATATTCAATAACATGCAACTGTCACGATAAATTAACCCTCTGGTTCACAGG
GAAAGGGGGGCCGGTAATCCAGAGTTCGGCCGTGAGGTAAGTCAATCCTGGCAAAGAATTGCTTTCATCAGGAACCGGACTCGGGTTCTCCCGAACAATT
CGTCCTAAGGAGAGCTCATTAACCATTTGAGCTCAATGTCTTGGTTATATACTCAGAAATGTTATTTCAACATCAATTTAGAACAATTAAACTTAGGGCA
ATTTAGAAATGTTATGTCACAACAAGTTTAATTACTTACCATTCTTAACTTCTTTGATTTTGTATTCATGGAACTTTTTAGGGTCTTTAGAGTAACCCAA
AGGATCAAAAGCACCACCAGGGTATTTCTTCTTCTCAGGGTCTTTCTCCATACTCCTTTGGTGCTCAACAAAAGCAATAGAAAGGAATTCAATGACCAAA
ATGGTAGGTAGGTTGCTTGTCCTCCAGGAAGTGCTGCCCATTCCTGTGCTTTTACCCAATTTCCTAATCCTAATGCCTCCGGTATCAAAATCCCTGGCTG
CAAAATATAAATGTAAGTAAATTTTAATGGTATGCACCGTCTCAGTAAATTAATTTTACAATGACATCCAATAAAAACTTAGTATTTTAAAAATAACTGC
AAAATATTAGATTCCCTTTGAACATCCGTGTAAAACTCGTCTAATTTTCTCCCCATGCACGCACGGGTAATCAATACTAGTAAAATAACATATAGGGTGT
CTAGATAAGTGACTTAAGAGTGGTACCGCGATTTTGTATTATTTGGAGTTTCAACAATATTATGGTGTCACCATTATTTGACTTAATTTACTGTCAATCT
AAACATGCGCGAAAAAAACACTAAACAACTTAATTGATTGAGAGATACTTACA