Detailed information on CNT30171603


BLAST search results

BLAST vs Swiss-Prot:
sp|P51088|CHS6_TRISU, E-value = 3e-99

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30379505Trifolium pratenseManihot esculenta32.4529.7484.21171forward
CNT30196012Trifolium pratensePisum sativum89.5643.8787.5472forward
CNT3087878Trifolium pratenseVigna radiata80.6527.1986.35425forward
CNT30145942Trifolium pratenseMedicago truncatula78.1868.190.29412forward
CNT30114124Trifolium pratenseFicus carica36.2416.6480.63191forward

Expression of CNT30171603

Peptides detected in this lncRNA

>peptide 1 (39 aa)
MKNNSFNGKSRSKAEQHTPVESFSGGFKSVLSRFLSHLI*

>peptide 2 (50 aa)
MNNTHALDMLPYSLSTSLVAFIFSGFKANFCSTWSRIAGPPGCAIQKIEL*

Sequence

>CNT30171603
ATGGTACAAATTGAACTCCATATTTATTCTTAAATGGAAGTTCAAGCAAGATAAATGTAATACATTAAAATAAATCAACCACACATATCATATAGCCACA
CTATGAAGAACAACAGTTTCAATGGTAAGTCCAGGTCCAAAGCCGAACAACACACCCCAGTCGAGTCCTTCTCCGGTGGTTTTAAGTCCGTTTTGAGCCG
ATTTCTTTCTCATCTCATCTAAGATGAACAATACACATGCACTTGACATGTTACCATATTCACTTAGTACATCTCTAGTAGCCTTCATCTTTTCAGGCTT
CAAAGCTAACTTTTGCTCAACTTGGTCTAGAATTGCAGGACCACCCGGGTGTGCAATCCAAAAGATTGAGTTGTAATCAGAGATGTTTAATGGTTGGAAT
GCCTCAACCAATGCTTTATCAATATTCTTTGAGACAATCCCAGGAACATCCTTAAGAAGATGAAATGTTAGTCCAGCTTCACGAAGATGACCGTCAATGG
CACCTTCACTGTCTGGAGCAATTGTTT