Detailed information on CNT30171495


BLAST search results

BLAST vs Swiss-Prot:
sp|P51088|CHS6_TRISU, E-value = 4e-114

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30524952Trifolium pratensePhaseolus vulgaris59.8176.2485.13491forward
CNT30628899Trifolium pratenseVigna unguiculata59.8143.1885.13491forward
CNT30196025Trifolium pratensePisum sativum53.1138.6589.45436forward
CNT30156253Trifolium pratensePistacia vera20.7121.8281.18170forward
CNT30145784Trifolium pratenseMedicago truncatula68.3351.7588.59561forward
CNT3030385Trifolium pratenseTheobroma cacao11.9424.5685.7198forward

Expression of CNT30171495

Peptides detected in this lncRNA

>peptide 1 (66 aa)
MSFNFLHKNQANLEVIHEYLSILYGHTVQNNSLNGKSRSKAEQHTPIKSFSGGFESILSRFLSHLI*

>peptide 2 (54 aa)
MAGMPQQVLYQYSLRQSREHPLEGEMLVQLLEDDHQWHLHCLEQLFVRSKPSQI*

>peptide 3 (42 aa)
MNNTHALDMLPYSLRTSLVAFIFSGFKANFCSTWSKIAGPPG*

>peptide 4 (33 aa)
MTINGTFTVWSNCLCGPNHLKYRLLNFWHWIRTN

>peptide 5 (34 aa)
MATLCKTTVSMVSPGPKPNNTPQSSPSPVVLSPF*

>peptide 6 (29 aa)
MAPSLSGAIVCAVQTISNIGFSISGTGSEP

Sequence

>CNT30171495
ACAAAAATCAATGGTTAGTACACAAGTATATTTAATCCTTTCATCTCTTTATTGTTATCTCTAATTTTCTCTTCTTACTGATTTAACATAGCAAATCTTA
ATTGTTTTTTGCATACAAGATTAAAGACTCAGAGCTTCAGCTTCTTTGAGACACCAGTGTCTTTCATGTGGGAAATAACTTGTTGATGGCTTCAACTAGC
TTGCTTCCATCGAATAAATGTTATTTGAATATGATTTCACATGTTGAACTCTAGATGAGTTTTAACTTCTTACATAAAAATCAAGCAAATTTAGAAGTGA
TACATGAATATTTAAGCATCTTATATGGCCACACTGTGCAAAACAACAGTCTCAATGGTAAGTCCAGGTCCAAAGCCGAACAACACACCCCAATCAAGTC
CTTCTCCGGTGGTTTTGAGTCCATTTTGAGCCGATTTCTTTCGCATCTCATCTAAGATGAACAATACACATGCACTTGACATGTTACCATATTCACTTAG
AACTTCCCTAGTAGCCTTCATCTTTTCAGGCTTCAAGGCTAACTTTTGCTCTACTTGGTCTAAAATTGCAGGTCCACCTGGATGAGCAATCCAAAAGATT
GAATTGTAATCAGAGATGTTTAATGGCTGGAATGCCTCAACAAGTGCTTTATCAATATTCTTTGAGACAATCCCGGGAACATCCTTTAGAAGGTGAAATG
TTAGTCCAGCTTCTCGAAGATGACCATCAATGGCACCTTCACTGTCTGGAGCAATTGTTTGTGCGGTCCAAACCATCTCAAATATAGGCTTCTCAATTTC
TGGCACTGGATCAGAACCAAC